Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48505 * 109.47001 * 269.99744 * 3 2 1 5 5 H 1.48494 * 109.47515 * 29.99740 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00180 * 3 2 1 7 7 C 1.37875 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.87702 * 300.92169 * 9 7 2 11 11 C 1.53783 * 109.39137 * 62.21016 * 9 7 2 12 12 C 1.52831 * 111.13480 * 63.79784 * 11 9 7 13 13 C 1.53635 * 110.64513 * 53.51270 * 12 11 9 14 14 N 1.45532 * 107.86166 * 302.86790 * 13 12 11 15 15 C 1.46342 * 117.21644 * 185.53959 * 14 13 12 16 16 C 1.54801 * 105.96444 * 208.07194 * 15 14 13 17 17 C 1.55337 * 104.98844 * 3.63993 * 16 15 14 18 18 C 1.48664 * 109.71445 * 65.31630 * 14 13 12 19 19 H 1.09007 * 111.10394 * 52.53972 * 18 14 13 20 20 H 0.96994 * 120.00103 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.26873 * 303.16937 * 11 9 7 22 22 H 1.08997 * 108.66805 * 184.04127 * 11 9 7 23 23 H 1.09002 * 109.23913 * 293.21071 * 12 11 9 24 24 H 1.08997 * 109.23909 * 173.81228 * 12 11 9 25 25 H 1.09002 * 109.78208 * 183.27645 * 13 12 11 26 26 H 1.09001 * 109.77933 * 62.45825 * 13 12 11 27 27 H 1.08998 * 110.15108 * 88.94739 * 15 14 13 28 28 H 1.09004 * 110.15449 * 327.19611 * 15 14 13 29 29 H 1.09001 * 110.33602 * 244.76941 * 16 15 14 30 30 H 1.08992 * 110.33946 * 122.51961 * 16 15 14 31 31 H 1.09007 * 110.90357 * 140.39799 * 17 16 15 32 32 H 1.08996 * 110.90763 * 264.00196 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6092 -2.5565 0.8796 11 6 0.4105 -2.6034 -1.2831 12 6 1.3020 -2.6439 -2.5237 13 6 2.3526 -3.7580 -2.3998 14 7 3.1175 -3.5172 -1.1853 15 6 4.2621 -4.3927 -0.9306 16 6 4.4271 -4.4409 0.6079 17 6 3.2390 -3.6102 1.1656 18 6 2.2338 -3.6634 0.0012 19 1 1.7071 -4.6176 -0.0169 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2560 -1.7433 -1.3475 22 1 -0.1838 -3.5160 -1.2377 23 1 1.8072 -1.6844 -2.6344 24 1 0.6853 -2.8280 -3.4034 25 1 3.0164 -3.7370 -3.2641 26 1 1.8572 -4.7269 -2.3377 27 1 5.1598 -3.9809 -1.3918 28 1 4.0643 -5.3919 -1.3186 29 1 5.3752 -3.9903 0.9015 30 1 4.3697 -5.4698 0.9629 31 1 2.8241 -4.0764 2.0593 32 1 3.5439 -2.5838 1.3698 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259575897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = -2.984723 kcal Electronic energy + Delta-G solvation = -13212.270851 eV Core-core repulsion = 11172.103507 eV Total energy + Delta-G solvation = -2040.167344 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03583 -34.34861 -32.58911 -30.58871 -28.39734 -26.37580 -24.66641 -21.70044 -20.60907 -19.99270 -18.61545 -15.72016 -15.09037 -14.99219 -14.17187 -13.76041 -13.33219 -12.57883 -12.49584 -12.05774 -11.77110 -11.33168 -11.19569 -10.78917 -10.72305 -10.49667 -10.38124 -10.13153 -9.81238 -9.54337 -9.26391 -8.98483 -8.51298 -8.14751 -7.34800 -5.81146 -3.80043 3.41545 3.47999 3.51984 4.59371 4.78032 5.27788 5.44933 5.51474 5.57924 5.91036 5.98542 6.02268 6.11162 6.24776 6.26698 6.37253 6.42929 6.59815 6.69034 6.79378 6.86504 7.04794 7.16233 7.40733 7.52704 7.66565 7.98807 8.04538 8.18757 8.26773 8.70306 9.23064 9.80638 11.26872 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.037234 B = 0.014971 C = 0.013018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.821575 B = 1869.811260 C = 2150.276571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.469 4.469 8 H 0.065 0.935 9 C 0.058 3.942 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.098 4.098 13 C 0.070 3.930 14 N -0.517 5.517 15 C 0.050 3.950 16 C -0.128 4.128 17 C -0.112 4.112 18 C 0.079 3.921 19 H 0.022 0.978 20 H 0.255 0.745 21 H 0.090 0.910 22 H 0.007 0.993 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.013 0.987 27 H 0.065 0.935 28 H 0.022 0.978 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -6.994 -1.414 8.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.147 4.147 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.507 4.507 8 H 0.083 0.917 9 C 0.039 3.961 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.136 4.136 13 C -0.058 4.058 14 N -0.242 5.242 15 C -0.078 4.078 16 C -0.167 4.167 17 C -0.150 4.150 18 C -0.028 4.028 19 H 0.040 0.960 20 H 0.065 0.935 21 H 0.108 0.892 22 H 0.026 0.974 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.957 -6.385 -1.506 8.223 hybrid contribution 0.174 0.026 -0.158 0.236 sum 5.131 -6.359 -1.664 8.339 Atomic orbital electron populations 1.69890 1.05794 1.25871 1.52715 1.24956 0.94724 0.98736 0.96280 0.86691 0.79841 0.84157 0.77820 1.21096 1.21781 1.20132 1.21087 0.93231 0.89361 1.47071 0.91714 1.18687 0.91896 0.91937 0.93551 0.95255 1.21595 0.98219 0.99555 0.95493 1.21424 0.96029 0.98698 0.97431 1.21878 0.95181 0.96747 0.92036 1.62654 1.07714 1.51300 1.02504 1.22468 0.95431 0.94054 0.95892 1.22631 0.99719 0.99345 0.94957 1.22379 0.94605 1.01307 0.96681 1.22675 0.93840 0.97604 0.88675 0.95983 0.93486 0.89168 0.97376 0.90875 0.94527 0.92676 0.96862 0.91648 0.95992 0.91874 0.92757 0.92648 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.46 55.43 0.64 -25.31 16 2 C 0.05 1.43 5.30 -17.82 -0.09 1.34 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.47 -12.61 6.45 -34.44 -0.22 -12.83 16 8 H 0.06 1.78 6.61 -52.49 -0.35 1.43 16 9 C 0.06 1.44 2.39 -91.69 -0.22 1.22 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.65 5.24 -26.41 -0.14 -2.79 16 12 C -0.10 -2.11 5.77 -26.49 -0.15 -2.26 16 13 C 0.07 1.36 5.85 -4.23 -0.02 1.34 16 14 N -0.52 -10.60 3.98 -225.05 -0.90 -11.49 16 15 C 0.05 0.85 6.86 -3.18 -0.02 0.83 16 16 C -0.13 -2.06 6.99 -24.54 -0.17 -2.24 16 17 C -0.11 -2.14 6.44 -25.01 -0.16 -2.30 16 18 C 0.08 1.69 2.34 -66.58 -0.16 1.54 16 19 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 21 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.07 1.74 7.68 -51.93 -0.40 1.34 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.01 0.25 8.05 -51.93 -0.42 -0.17 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.02 0.35 8.04 -51.93 -0.42 -0.07 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 32 H 0.09 1.92 6.45 -51.93 -0.33 1.58 16 LS Contribution 244.42 15.07 3.68 3.68 Total: -1.00 -28.06 244.42 -8.13 -36.20 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -5.17 Total: -3.67 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -1.36 Total: -16.15 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: -0.26 Total: -36.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.06 -8.13 -36.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259575897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.211 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds