Wall clock time and date at job start Mon Mar 30 2020 03:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99869 * 2 1 4 4 H 1.48505 * 109.47001 * 269.99744 * 3 2 1 5 5 H 1.48494 * 109.47515 * 29.99740 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00180 * 3 2 1 7 7 C 1.37875 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00151 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99783 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.87702 * 300.92169 * 9 7 2 11 11 C 1.53783 * 109.39137 * 62.21016 * 9 7 2 12 12 C 1.52831 * 111.13480 * 63.79784 * 11 9 7 13 13 C 1.53635 * 110.64513 * 53.51270 * 12 11 9 14 14 N 1.45532 * 107.86166 * 302.86790 * 13 12 11 15 15 C 1.46342 * 117.21644 * 185.53959 * 14 13 12 16 16 C 1.54801 * 105.96444 * 208.07194 * 15 14 13 17 17 C 1.55337 * 104.98844 * 3.63993 * 16 15 14 18 18 C 1.48664 * 109.71445 * 65.31630 * 14 13 12 19 19 H 1.09007 * 111.10394 * 52.53972 * 18 14 13 20 20 H 0.96994 * 120.00103 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.26873 * 303.16937 * 11 9 7 22 22 H 1.08997 * 108.66805 * 184.04127 * 11 9 7 23 23 H 1.09002 * 109.23913 * 293.21071 * 12 11 9 24 24 H 1.08997 * 109.23909 * 173.81228 * 12 11 9 25 25 H 1.09002 * 109.78208 * 183.27645 * 13 12 11 26 26 H 1.09001 * 109.77933 * 62.45825 * 13 12 11 27 27 H 1.08998 * 110.15108 * 88.94739 * 15 14 13 28 28 H 1.09004 * 110.15449 * 327.19611 * 15 14 13 29 29 H 1.09001 * 110.33602 * 244.76941 * 16 15 14 30 30 H 1.08992 * 110.33946 * 122.51961 * 16 15 14 31 31 H 1.09007 * 110.90357 * 140.39799 * 17 16 15 32 32 H 1.08996 * 110.90763 * 264.00196 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6092 -2.5565 0.8796 11 6 0.4105 -2.6034 -1.2831 12 6 1.3020 -2.6439 -2.5237 13 6 2.3526 -3.7580 -2.3998 14 7 3.1175 -3.5172 -1.1853 15 6 4.2621 -4.3927 -0.9306 16 6 4.4271 -4.4409 0.6079 17 6 3.2390 -3.6102 1.1656 18 6 2.2338 -3.6634 0.0012 19 1 1.7071 -4.6176 -0.0169 20 1 -0.4850 0.8400 -0.0004 21 1 -0.2560 -1.7433 -1.3475 22 1 -0.1838 -3.5160 -1.2377 23 1 1.8072 -1.6844 -2.6344 24 1 0.6853 -2.8280 -3.4034 25 1 3.0164 -3.7370 -3.2641 26 1 1.8572 -4.7269 -2.3377 27 1 5.1598 -3.9809 -1.3918 28 1 4.0643 -5.3919 -1.3186 29 1 5.3752 -3.9903 0.9015 30 1 4.3697 -5.4698 0.9629 31 1 2.8241 -4.0764 2.0593 32 1 3.5439 -2.5838 1.3698 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259575897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:50 Heat of formation + Delta-G solvation = -19.531898 kcal Electronic energy + Delta-G solvation = -13212.988390 eV Core-core repulsion = 11172.103507 eV Total energy + Delta-G solvation = -2040.884884 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63755 -36.08546 -34.40881 -32.44548 -29.97628 -28.00410 -26.67436 -23.40788 -22.19626 -21.46769 -20.45648 -17.72248 -16.85007 -16.48720 -16.02158 -15.35873 -15.03488 -14.31643 -14.12536 -13.74013 -13.53874 -12.99396 -12.95325 -12.70589 -12.42936 -12.12505 -11.98509 -11.78676 -11.47793 -11.36304 -11.06113 -10.83060 -10.46859 -10.24621 -8.87601 -7.94005 -5.97893 1.44339 1.45990 1.55038 2.53668 3.26456 3.38891 3.88327 4.05214 4.21041 4.39288 4.44292 4.47123 4.63605 4.75419 4.78253 4.85889 4.94991 5.05774 5.12195 5.14954 5.22324 5.39845 5.51143 5.59586 5.66330 5.76029 5.95492 6.14605 6.35895 6.66281 6.70871 7.09726 7.65066 9.12963 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.037234 B = 0.014971 C = 0.013018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.821575 B = 1869.811260 C = 2150.276571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.942 3.058 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.464 4.464 8 H 0.058 0.942 9 C 0.052 3.948 10 H -0.006 1.006 11 C -0.108 4.108 12 C -0.093 4.093 13 C 0.074 3.926 14 N -0.540 5.540 15 C 0.048 3.952 16 C -0.118 4.118 17 C -0.114 4.114 18 C 0.081 3.919 19 H 0.028 0.972 20 H 0.253 0.747 21 H 0.055 0.945 22 H 0.017 0.983 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.078 0.922 26 H 0.026 0.974 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -8.236 -1.929 10.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.503 4.503 8 H 0.076 0.924 9 C 0.033 3.967 10 H 0.012 0.988 11 C -0.146 4.146 12 C -0.131 4.131 13 C -0.054 4.054 14 N -0.265 5.265 15 C -0.079 4.079 16 C -0.156 4.156 17 C -0.152 4.152 18 C -0.026 4.026 19 H 0.046 0.954 20 H 0.062 0.938 21 H 0.074 0.926 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.681 -7.637 -2.022 10.346 hybrid contribution -0.387 0.393 0.013 0.551 sum 6.294 -7.244 -2.010 9.805 Atomic orbital electron populations 1.70031 1.07004 1.26247 1.53992 1.25627 0.95422 1.01734 0.96558 0.85794 0.78848 0.80693 0.77687 1.20951 1.21773 1.19462 1.21231 0.92869 0.90342 1.45830 0.92395 1.18632 0.92430 0.93093 0.92543 0.98772 1.21486 0.98218 0.98413 0.96528 1.21336 0.96438 0.98430 0.96883 1.21835 0.94940 0.96038 0.92601 1.62562 1.08401 1.53327 1.02254 1.22567 0.94207 0.94418 0.96713 1.22606 0.98673 1.00257 0.94055 1.22321 0.95606 1.00620 0.96618 1.22489 0.93775 0.95863 0.90521 0.95450 0.93796 0.92624 0.96389 0.93740 0.92278 0.90367 0.95608 0.90607 0.94138 0.90511 0.90198 0.91461 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 11.46 21.45 0.25 -54.84 16 2 C 0.00 0.13 5.30 84.65 0.45 0.57 16 3 Si 0.94 45.19 29.54 68.60 2.03 47.21 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.46 -25.33 6.45 25.60 0.17 -25.16 16 8 H 0.06 3.20 6.61 -2.91 -0.02 3.18 16 9 C 0.05 2.62 2.39 -11.48 -0.03 2.59 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.11 -5.26 5.24 30.80 0.16 -5.09 16 12 C -0.09 -3.92 5.77 30.75 0.18 -3.74 16 13 C 0.07 2.68 5.85 86.77 0.51 3.19 16 14 N -0.54 -20.92 3.98 -865.93 -3.45 -24.37 16 15 C 0.05 1.48 6.86 87.02 0.60 2.08 16 16 C -0.12 -3.37 6.99 32.01 0.22 -3.15 16 17 C -0.11 -4.17 6.44 31.71 0.20 -3.96 16 18 C 0.08 3.37 2.34 44.67 0.10 3.48 16 19 H 0.03 1.11 8.06 -2.38 -0.02 1.09 16 20 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 21 H 0.06 3.08 6.17 -2.39 -0.01 3.06 16 22 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.04 2.10 7.68 -2.39 -0.02 2.09 16 24 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 26 H 0.03 0.88 8.05 -2.39 -0.02 0.86 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.11 8.04 -2.39 -0.02 1.09 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 32 H 0.06 2.65 6.45 -2.39 -0.02 2.63 16 Total: -1.00 -60.45 244.42 2.46 -57.99 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.07 Total: 3.20 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 2.56 Total: -29.20 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.20 Total: -79.21 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -60.45 2.46 -57.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259575897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.462 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds