Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00064 * 2 1 4 4 H 1.48497 * 109.47322 * 274.99247 * 3 2 1 5 5 H 1.48500 * 109.46863 * 34.99259 * 3 2 1 6 6 H 1.48498 * 109.47012 * 154.98873 * 3 2 1 7 7 C 1.37873 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00539 * 189.42131 * 7 2 1 9 9 C 1.50705 * 119.99695 * 9.41948 * 7 2 1 10 10 H 1.08998 * 109.50204 * 305.52424 * 9 7 2 11 11 C 1.53117 * 109.53770 * 65.58600 * 9 7 2 12 12 C 1.53121 * 109.15924 * 177.57393 * 11 9 7 13 13 C 1.53044 * 109.30996 * 302.40469 * 12 11 9 14 14 N 1.46846 * 109.52163 * 59.15858 * 13 12 11 15 15 C 1.46847 * 111.19727 * 298.25825 * 14 13 12 16 16 H 1.08999 * 109.45998 * 301.72021 * 15 14 13 17 17 C 1.53006 * 109.46018 * 181.74931 * 15 14 13 18 18 C 1.52993 * 117.49978 * 128.74317 * 17 15 14 19 19 C 1.52999 * 117.49671 * 60.08328 * 17 15 14 20 20 H 0.97003 * 119.99458 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.49131 * 57.69058 * 11 9 7 22 22 H 1.08997 * 109.55800 * 297.49992 * 11 9 7 23 23 H 1.08999 * 109.50428 * 182.44387 * 12 11 9 24 24 H 1.08998 * 109.50547 * 62.36523 * 12 11 9 25 25 H 1.08995 * 109.45757 * 179.17747 * 13 12 11 26 26 H 1.08998 * 109.46093 * 299.14154 * 13 12 11 27 27 H 1.00897 * 110.99535 * 174.15771 * 14 13 12 28 28 H 1.09004 * 115.54838 * 274.41668 * 17 15 14 29 29 H 1.09005 * 117.49865 * 0.02562 * 18 17 15 30 30 H 1.08999 * 117.49866 * 145.01616 * 18 17 15 31 31 H 1.09001 * 117.49865 * 214.97976 * 19 17 15 32 32 H 1.08997 * 117.50421 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0736 -1.2005 0.1525 9 6 1.2662 -2.4902 -0.2147 10 1 0.4559 -2.5714 0.5098 11 6 0.6885 -2.5223 -1.6324 12 6 -0.0073 -3.8669 -1.8612 13 6 0.9952 -5.0007 -1.6338 14 7 1.5174 -4.9264 -0.2633 15 6 2.2317 -3.6639 -0.0350 16 1 3.0492 -3.5746 -0.7505 17 6 2.7952 -3.6470 1.3874 18 6 4.2784 -3.3115 1.5557 19 6 3.7893 -4.7466 1.7664 20 1 -0.4849 0.8401 -0.0004 21 1 1.4944 -2.4013 -2.3563 22 1 -0.0330 -1.7139 -1.7507 23 1 -0.3830 -3.9129 -2.8834 24 1 -0.8381 -3.9702 -1.1632 25 1 0.4986 -5.9596 -1.7818 26 1 1.8183 -4.9051 -2.3419 27 1 2.1080 -5.7183 -0.0581 28 1 2.1097 -3.2999 2.1605 29 1 4.8527 -3.1023 0.6532 30 1 4.5688 -2.7438 2.4398 31 1 3.7581 -5.1225 2.7891 32 1 4.0422 -5.4817 1.0025 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259613978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = 8.611248 kcal Electronic energy + Delta-G solvation = -12861.193660 eV Core-core repulsion = 10821.529155 eV Total energy + Delta-G solvation = -2039.664505 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.40806 -35.60888 -33.03565 -30.54404 -29.68393 -24.89461 -23.41777 -21.85847 -21.30104 -19.52171 -18.61563 -16.65938 -15.44441 -14.56721 -14.44464 -13.63208 -13.59180 -12.86540 -12.63092 -12.31984 -11.92355 -11.24280 -11.04500 -10.85796 -10.68387 -10.64836 -10.10073 -9.97943 -9.86352 -9.48926 -9.46433 -8.81075 -8.64128 -8.25488 -7.64524 -5.94892 -3.94728 3.33616 3.41207 3.44003 4.40800 4.50428 4.94138 5.35090 5.42018 5.59722 5.72707 5.75610 5.88111 6.05265 6.09423 6.18051 6.29021 6.41558 6.52509 6.62646 6.68965 6.72569 6.96042 7.07001 7.23158 7.38348 7.70136 7.80819 8.03549 8.12446 8.20059 8.55242 9.09662 9.67519 11.14639 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.015114 C = 0.010844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.770243 B = 1852.141994 C = 2581.438689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.062 3.938 10 H 0.041 0.959 11 C -0.107 4.107 12 C -0.119 4.119 13 C 0.066 3.934 14 N -0.686 5.686 15 C 0.125 3.875 16 H 0.021 0.979 17 C -0.101 4.101 18 C -0.174 4.174 19 C -0.200 4.200 20 H 0.258 0.742 21 H 0.031 0.969 22 H 0.073 0.927 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.324 0.676 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.991 -7.424 -0.594 8.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.043 3.957 10 H 0.059 0.941 11 C -0.145 4.145 12 C -0.157 4.157 13 C -0.064 4.064 14 N -0.317 5.317 15 C 0.016 3.984 16 H 0.039 0.961 17 C -0.120 4.120 18 C -0.212 4.212 19 C -0.237 4.237 20 H 0.068 0.932 21 H 0.050 0.950 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.141 0.859 28 H 0.123 0.877 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.238 -7.067 -0.337 7.781 hybrid contribution 1.325 0.832 -0.563 1.663 sum 4.563 -6.235 -0.900 7.778 Atomic orbital electron populations 1.69985 1.05860 1.26245 1.50644 1.24924 0.94685 0.98816 0.95344 0.86723 0.80135 0.84176 0.77848 1.20916 1.21429 1.19924 1.21141 0.94114 0.90724 1.48588 0.92504 1.18676 0.93804 0.90132 0.93094 0.94092 1.21617 0.99014 0.94608 0.99301 1.21671 0.98283 0.96400 0.99319 1.21828 0.97073 0.98527 0.88939 1.60340 1.42280 1.04426 1.24643 1.21272 0.95036 0.90133 0.91912 0.96063 1.22121 0.91255 0.99801 0.98803 1.22839 0.98565 0.97226 1.02541 1.22903 1.07349 0.92082 1.01362 0.93203 0.95009 0.90843 0.93684 0.91980 0.92414 0.96490 0.85915 0.87715 0.89540 0.89450 0.89651 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 12.19 55.43 0.68 -25.03 16 2 C 0.06 1.76 5.23 -17.82 -0.09 1.67 16 3 Si 0.88 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.74 7.86 -34.44 -0.27 -14.01 16 8 H 0.06 1.53 7.24 -52.49 -0.38 1.15 16 9 C 0.06 1.54 1.63 -91.69 -0.15 1.39 16 10 H 0.04 1.16 8.09 -51.93 -0.42 0.74 16 11 C -0.11 -2.54 5.10 -26.61 -0.14 -2.68 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.07 1.16 6.55 -3.83 -0.03 1.14 16 14 N -0.69 -12.85 6.50 -106.76 -0.69 -13.54 16 15 C 0.12 2.64 2.13 -67.72 -0.14 2.49 16 16 H 0.02 0.47 7.90 -51.93 -0.41 0.06 16 17 C -0.10 -1.97 4.57 -90.62 -0.41 -2.39 16 18 C -0.17 -3.03 9.80 -26.70 -0.26 -3.29 16 19 C -0.20 -3.13 9.71 -26.70 -0.26 -3.39 16 20 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 21 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 1.93 6.99 -51.93 -0.36 1.57 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.32 5.28 7.82 -39.29 -0.31 4.97 16 28 H 0.10 2.22 8.11 -51.93 -0.42 1.80 16 29 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.18 7.69 -51.93 -0.40 0.78 16 LS Contribution 255.41 15.07 3.85 3.85 Total: -1.00 -28.10 255.41 -8.32 -36.42 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.21 Total: 3.51 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.92 Total: -21.58 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: -0.02 Total: -38.57 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.10 -8.32 -36.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.030 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds