Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 120.00064 * 2 1 4 4 H 1.48497 * 109.47322 * 274.99247 * 3 2 1 5 5 H 1.48500 * 109.46863 * 34.99259 * 3 2 1 6 6 H 1.48498 * 109.47012 * 154.98873 * 3 2 1 7 7 C 1.37873 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00539 * 189.42131 * 7 2 1 9 9 C 1.50705 * 119.99695 * 9.41948 * 7 2 1 10 10 H 1.08998 * 109.50204 * 305.52424 * 9 7 2 11 11 C 1.53117 * 109.53770 * 65.58600 * 9 7 2 12 12 C 1.53121 * 109.15924 * 177.57393 * 11 9 7 13 13 C 1.53044 * 109.30996 * 302.40469 * 12 11 9 14 14 N 1.46846 * 109.52163 * 59.15858 * 13 12 11 15 15 C 1.46847 * 111.19727 * 298.25825 * 14 13 12 16 16 H 1.08999 * 109.45998 * 301.72021 * 15 14 13 17 17 C 1.53006 * 109.46018 * 181.74931 * 15 14 13 18 18 C 1.52993 * 117.49978 * 128.74317 * 17 15 14 19 19 C 1.52999 * 117.49671 * 60.08328 * 17 15 14 20 20 H 0.97003 * 119.99458 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.49131 * 57.69058 * 11 9 7 22 22 H 1.08997 * 109.55800 * 297.49992 * 11 9 7 23 23 H 1.08999 * 109.50428 * 182.44387 * 12 11 9 24 24 H 1.08998 * 109.50547 * 62.36523 * 12 11 9 25 25 H 1.08995 * 109.45757 * 179.17747 * 13 12 11 26 26 H 1.08998 * 109.46093 * 299.14154 * 13 12 11 27 27 H 1.00897 * 110.99535 * 174.15771 * 14 13 12 28 28 H 1.09004 * 115.54838 * 274.41668 * 17 15 14 29 29 H 1.09005 * 117.49865 * 0.02562 * 18 17 15 30 30 H 1.08999 * 117.49866 * 145.01616 * 18 17 15 31 31 H 1.09001 * 117.49865 * 214.97976 * 19 17 15 32 32 H 1.08997 * 117.50421 * 0.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1074 -1.3947 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5919 7 6 2.0046 -1.1940 -0.0005 8 1 3.0736 -1.2005 0.1525 9 6 1.2662 -2.4902 -0.2147 10 1 0.4559 -2.5714 0.5098 11 6 0.6885 -2.5223 -1.6324 12 6 -0.0073 -3.8669 -1.8612 13 6 0.9952 -5.0007 -1.6338 14 7 1.5174 -4.9264 -0.2633 15 6 2.2317 -3.6639 -0.0350 16 1 3.0492 -3.5746 -0.7505 17 6 2.7952 -3.6470 1.3874 18 6 4.2784 -3.3115 1.5557 19 6 3.7893 -4.7466 1.7664 20 1 -0.4849 0.8401 -0.0004 21 1 1.4944 -2.4013 -2.3563 22 1 -0.0330 -1.7139 -1.7507 23 1 -0.3830 -3.9129 -2.8834 24 1 -0.8381 -3.9702 -1.1632 25 1 0.4986 -5.9596 -1.7818 26 1 1.8183 -4.9051 -2.3419 27 1 2.1080 -5.7183 -0.0581 28 1 2.1097 -3.2999 2.1605 29 1 4.8527 -3.1023 0.6532 30 1 4.5688 -2.7438 2.4398 31 1 3.7581 -5.1225 2.7891 32 1 4.0422 -5.4817 1.0025 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259613978.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = -8.893442 kcal Electronic energy + Delta-G solvation = -12861.952721 eV Core-core repulsion = 10821.529155 eV Total energy + Delta-G solvation = -2040.423566 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02179 -37.09982 -35.02387 -32.31110 -31.44284 -26.88639 -25.02942 -23.40251 -22.85932 -21.08327 -20.37293 -18.60476 -17.19969 -16.38114 -16.01035 -15.25334 -15.11665 -14.59162 -14.28538 -14.20926 -13.59494 -13.02771 -12.71798 -12.61310 -12.44602 -12.30791 -11.89574 -11.70282 -11.44474 -11.37886 -11.00147 -10.54080 -10.45878 -10.38739 -9.16885 -8.08226 -6.14165 1.39788 1.41343 1.51079 2.45064 3.02720 3.22577 3.49275 3.99855 4.16097 4.24455 4.28907 4.36486 4.52281 4.58034 4.75705 4.83351 4.92414 4.95853 5.07880 5.10918 5.25603 5.34267 5.38113 5.45468 5.52570 5.69772 5.96548 6.06130 6.21590 6.53143 6.77310 6.98480 7.51370 9.01182 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.030402 B = 0.015114 C = 0.010844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.770243 B = 1852.141994 C = 2581.438689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.061 3.939 10 H -0.005 1.005 11 C -0.104 4.104 12 C -0.114 4.114 13 C 0.067 3.933 14 N -0.691 5.691 15 C 0.138 3.862 16 H 0.015 0.985 17 C -0.135 4.135 18 C -0.178 4.178 19 C -0.160 4.160 20 H 0.258 0.742 21 H 0.029 0.971 22 H 0.037 0.963 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.026 0.974 27 H 0.343 0.657 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -8.881 -0.869 10.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.042 3.958 10 H 0.013 0.987 11 C -0.143 4.143 12 C -0.152 4.152 13 C -0.062 4.062 14 N -0.323 5.323 15 C 0.028 3.972 16 H 0.033 0.967 17 C -0.154 4.154 18 C -0.216 4.216 19 C -0.197 4.197 20 H 0.066 0.934 21 H 0.047 0.953 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.066 0.934 25 H 0.111 0.889 26 H 0.044 0.956 27 H 0.163 0.837 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.753 -8.545 -0.611 9.797 hybrid contribution 0.829 1.270 -0.462 1.586 sum 5.581 -7.274 -1.073 9.231 Atomic orbital electron populations 1.70121 1.07320 1.26865 1.51900 1.25685 0.95427 1.02165 0.95311 0.85745 0.79121 0.80145 0.77914 1.20438 1.21328 1.19004 1.21465 0.94159 0.91955 1.47817 0.92594 1.18574 0.93219 0.91501 0.92480 0.98654 1.21480 0.98264 0.96036 0.98480 1.21608 0.98168 0.94959 1.00463 1.21873 0.96843 0.98989 0.88471 1.60241 1.42457 1.04060 1.25578 1.20915 0.93622 0.89764 0.92851 0.96737 1.21925 0.92039 1.04191 0.97217 1.22911 0.96600 0.99213 1.02830 1.22985 1.02590 0.91133 1.03024 0.93353 0.95258 0.94417 0.91169 0.93426 0.88918 0.95626 0.83749 0.90509 0.89654 0.88843 0.87596 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 12.19 21.45 0.26 -55.02 16 2 C 0.01 0.69 5.23 84.65 0.44 1.13 16 3 Si 0.94 44.51 29.55 68.60 2.03 46.54 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.52 -28.59 7.86 25.60 0.20 -28.39 16 8 H 0.06 3.04 7.24 -2.91 -0.02 3.02 16 9 C 0.06 3.15 1.63 -11.49 -0.02 3.13 16 10 H 0.00 -0.29 8.09 -2.39 -0.02 -0.31 16 11 C -0.10 -5.06 5.10 30.67 0.16 -4.90 16 12 C -0.11 -4.42 6.09 30.65 0.19 -4.24 16 13 C 0.07 2.20 6.55 86.33 0.57 2.77 16 14 N -0.69 -24.52 6.50 -491.67 -3.20 -27.71 16 15 C 0.14 5.74 2.13 44.94 0.10 5.83 16 16 H 0.01 0.63 7.90 -2.39 -0.02 0.61 16 17 C -0.13 -5.17 4.57 -10.79 -0.05 -5.22 16 18 C -0.18 -5.90 9.80 30.62 0.30 -5.59 16 19 C -0.16 -4.52 9.71 30.62 0.30 -4.22 16 20 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 21 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.04 2.06 6.99 -2.39 -0.02 2.04 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 25 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 26 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.34 10.03 7.82 -89.70 -0.70 9.32 16 28 H 0.08 3.35 8.11 -2.38 -0.02 3.33 16 29 H 0.08 2.84 8.05 -2.38 -0.02 2.82 16 30 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.10 2.48 7.69 -2.39 -0.02 2.47 16 Total: -1.00 -62.12 255.41 1.65 -60.47 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.38 Total: 15.43 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 2.18 Total: -39.70 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.94 Total: -82.74 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -62.12 1.65 -60.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259613978.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.577 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds