Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47433 * 270.00545 * 3 2 1 5 5 H 1.48497 * 109.46866 * 30.00268 * 3 2 1 6 6 H 1.48497 * 109.47267 * 149.99917 * 3 2 1 7 7 C 1.37877 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00324 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.01783 * 6.41260 * 9 7 2 11 11 N 1.48123 * 110.00766 * 127.75079 * 9 7 2 12 12 C 1.48609 * 105.84815 * 144.49372 * 11 9 7 13 13 C 1.55116 * 103.33366 * 321.26801 * 12 11 9 14 14 C 1.53193 * 110.00562 * 245.07702 * 9 7 2 15 15 C 1.53073 * 111.15970 * 118.82685 * 14 9 7 16 16 C 1.54487 * 106.27507 * 238.67181 * 15 14 9 17 17 C 1.54960 * 104.21884 * 336.49791 * 16 15 14 18 18 C 1.53471 * 110.93967 * 359.33003 * 14 9 7 19 19 H 0.97000 * 120.00148 * 359.97438 * 1 2 3 20 20 H 1.00900 * 111.00624 * 265.03000 * 11 9 7 21 21 H 1.08997 * 110.64975 * 202.80971 * 12 11 9 22 22 H 1.09003 * 110.65043 * 79.73156 * 12 11 9 23 23 H 1.08995 * 110.76306 * 278.43762 * 13 12 11 24 24 H 1.09006 * 110.91955 * 155.12323 * 13 12 11 25 25 H 1.09000 * 110.09569 * 119.46569 * 15 14 9 26 26 H 1.09001 * 110.09616 * 357.87471 * 15 14 9 27 27 H 1.09005 * 110.47777 * 95.18135 * 16 15 14 28 28 H 1.08999 * 110.47858 * 217.80749 * 16 15 14 29 29 H 1.08997 * 110.73805 * 155.83763 * 17 16 15 30 30 H 1.09001 * 110.73677 * 279.15687 * 17 16 15 31 31 H 1.08994 * 110.52882 * 26.15308 * 18 14 9 32 32 H 1.09007 * 110.63953 * 263.46210 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 1 0.1832 -2.3134 -0.1164 11 7 1.7362 -3.3634 -1.1026 12 6 1.6796 -4.7541 -0.5819 13 6 2.1358 -4.6028 0.8929 14 6 1.5140 -3.2572 1.3033 15 6 0.2172 -3.4744 2.0870 16 6 0.4250 -2.8029 3.4627 17 6 1.9638 -2.7729 3.6430 18 6 2.4734 -2.4734 2.2092 19 1 -0.4850 0.8400 0.0004 20 1 1.1591 -3.2609 -1.9239 21 1 2.3650 -5.3987 -1.1320 22 1 0.6621 -5.1420 -0.6316 23 1 3.2230 -4.5621 0.9588 24 1 1.7430 -5.4132 1.5070 25 1 0.0310 -4.5407 2.2150 26 1 -0.6184 -3.0079 1.5651 27 1 0.0217 -1.7902 3.4576 28 1 -0.0399 -3.3956 4.2505 29 1 2.2565 -1.9790 4.3302 30 1 2.3308 -3.7391 3.9890 31 1 2.4128 -1.4060 1.9973 32 1 3.4961 -2.8294 2.0850 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259631418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -10.930562 kcal Electronic energy + Delta-G solvation = -13175.680150 eV Core-core repulsion = 11135.168248 eV Total energy + Delta-G solvation = -2040.511902 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.92918 -34.64920 -32.58571 -28.81659 -28.40299 -27.82753 -24.47264 -21.99247 -20.37937 -19.94137 -17.75079 -15.93377 -15.40379 -14.55062 -14.37954 -13.97320 -13.56420 -12.58708 -12.07419 -12.01675 -11.61249 -11.25438 -11.01086 -10.85446 -10.58083 -10.38845 -10.19656 -10.03304 -9.83584 -9.62492 -9.42033 -9.10419 -8.87496 -8.44537 -7.19040 -5.96289 -3.95819 3.32799 3.39734 3.43385 4.44899 5.15621 5.39985 5.46772 5.57649 5.75912 5.88823 5.95947 6.09540 6.30105 6.33315 6.38321 6.45907 6.56450 6.60190 6.66023 6.71523 6.88569 7.03012 7.10117 7.24446 7.31166 7.61543 7.69915 7.93107 8.19818 8.51369 8.65422 9.13724 9.62636 11.09039 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.016178 C = 0.013159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.689664 B = 1730.278493 C = 2127.282281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.473 4.473 8 H 0.058 0.942 9 C 0.190 3.810 10 H 0.049 0.951 11 N -0.673 5.673 12 C 0.034 3.966 13 C -0.111 4.111 14 C -0.064 4.064 15 C -0.106 4.106 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.101 4.101 19 H 0.260 0.740 20 H 0.318 0.682 21 H 0.057 0.943 22 H 0.021 0.979 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.163 -5.791 3.965 7.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.512 4.512 8 H 0.076 0.924 9 C 0.083 3.917 10 H 0.067 0.933 11 N -0.302 5.302 12 C -0.096 4.096 13 C -0.149 4.149 14 C -0.065 4.065 15 C -0.144 4.144 16 C -0.155 4.155 17 C -0.166 4.166 18 C -0.138 4.138 19 H 0.070 0.930 20 H 0.132 0.868 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.723 -5.547 4.066 7.090 hybrid contribution -0.608 0.642 -0.040 0.885 sum 1.115 -4.904 4.026 6.442 Atomic orbital electron populations 1.69886 1.05894 1.26520 1.51361 1.25011 0.94881 0.99149 0.95158 0.86635 0.79947 0.83556 0.78141 1.20727 1.21423 1.19740 1.20900 0.93194 0.89355 1.47727 0.92355 1.20187 0.96701 0.90308 0.84510 0.93261 1.63526 1.56424 1.02297 1.07933 1.22948 0.97432 0.93442 0.95807 1.22591 1.00119 0.96964 0.95178 1.21501 0.93642 0.93711 0.97637 1.22204 0.98407 0.98168 0.95616 1.22307 0.96176 1.00515 0.96458 1.22597 0.95797 0.99429 0.98802 1.22593 0.96266 1.04021 0.90924 0.93009 0.86798 0.92429 0.96096 0.91977 0.93105 0.93783 0.91750 0.91710 0.93558 0.92973 0.93301 0.87767 0.93785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 12.63 55.43 0.70 -24.79 16 2 C 0.06 1.62 5.45 -17.82 -0.10 1.52 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.47 -12.74 5.77 -34.44 -0.20 -12.94 16 8 H 0.06 1.62 7.65 -52.49 -0.40 1.21 16 9 C 0.19 4.69 3.26 -68.09 -0.22 4.47 16 10 H 0.05 1.36 5.97 -51.93 -0.31 1.05 16 11 N -0.67 -15.25 7.14 -104.46 -0.75 -15.99 16 12 C 0.03 0.65 7.56 -1.76 -0.01 0.63 16 13 C -0.11 -2.11 6.16 -25.19 -0.16 -2.27 16 14 C -0.06 -1.36 0.82 -153.71 -0.13 -1.49 16 15 C -0.11 -2.12 6.15 -25.91 -0.16 -2.28 16 16 C -0.12 -2.15 6.85 -24.92 -0.17 -2.32 16 17 C -0.13 -2.32 6.92 -24.60 -0.17 -2.49 16 18 C -0.10 -2.13 5.22 -25.39 -0.13 -2.27 16 19 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 20 H 0.32 6.96 8.92 -39.29 -0.35 6.61 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 1.19 7.42 -51.93 -0.39 0.80 16 24 H 0.05 0.87 7.35 -51.93 -0.38 0.49 16 25 H 0.04 0.79 7.25 -51.93 -0.38 0.41 16 26 H 0.06 1.42 7.14 -51.93 -0.37 1.04 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 2.52 5.68 -51.93 -0.29 2.22 16 32 H 0.04 0.90 7.40 -51.93 -0.38 0.51 16 LS Contribution 246.72 15.07 3.72 3.72 Total: -1.00 -27.68 246.72 -7.72 -35.40 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.93 Total: 4.84 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -1.44 Total: -19.42 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.05 Total: -40.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -27.68 -7.72 -35.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.469 kcal (2) G-P(sol) polarization free energy of solvation -27.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds