Wall clock time and date at job start Mon Mar 30 2020 02:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00022 * 2 1 4 4 H 1.48499 * 109.47433 * 270.00545 * 3 2 1 5 5 H 1.48497 * 109.46866 * 30.00268 * 3 2 1 6 6 H 1.48497 * 109.47267 * 149.99917 * 3 2 1 7 7 C 1.37877 * 120.00138 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00260 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00324 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.01783 * 6.41260 * 9 7 2 11 11 N 1.48123 * 110.00766 * 127.75079 * 9 7 2 12 12 C 1.48609 * 105.84815 * 144.49372 * 11 9 7 13 13 C 1.55116 * 103.33366 * 321.26801 * 12 11 9 14 14 C 1.53193 * 110.00562 * 245.07702 * 9 7 2 15 15 C 1.53073 * 111.15970 * 118.82685 * 14 9 7 16 16 C 1.54487 * 106.27507 * 238.67181 * 15 14 9 17 17 C 1.54960 * 104.21884 * 336.49791 * 16 15 14 18 18 C 1.53471 * 110.93967 * 359.33003 * 14 9 7 19 19 H 0.97000 * 120.00148 * 359.97438 * 1 2 3 20 20 H 1.00900 * 111.00624 * 265.03000 * 11 9 7 21 21 H 1.08997 * 110.64975 * 202.80971 * 12 11 9 22 22 H 1.09003 * 110.65043 * 79.73156 * 12 11 9 23 23 H 1.08995 * 110.76306 * 278.43762 * 13 12 11 24 24 H 1.09006 * 110.91955 * 155.12323 * 13 12 11 25 25 H 1.09000 * 110.09569 * 119.46569 * 15 14 9 26 26 H 1.09001 * 110.09616 * 357.87471 * 15 14 9 27 27 H 1.09005 * 110.47777 * 95.18135 * 16 15 14 28 28 H 1.08999 * 110.47858 * 217.80749 * 16 15 14 29 29 H 1.08997 * 110.73805 * 155.83763 * 17 16 15 30 30 H 1.09001 * 110.73677 * 279.15687 * 17 16 15 31 31 H 1.08994 * 110.52882 * 26.15308 * 18 14 9 32 32 H 1.09007 * 110.63953 * 263.46210 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 1 0.1832 -2.3134 -0.1164 11 7 1.7362 -3.3634 -1.1026 12 6 1.6796 -4.7541 -0.5819 13 6 2.1358 -4.6028 0.8929 14 6 1.5140 -3.2572 1.3033 15 6 0.2172 -3.4744 2.0870 16 6 0.4250 -2.8029 3.4627 17 6 1.9638 -2.7729 3.6430 18 6 2.4734 -2.4734 2.2092 19 1 -0.4850 0.8400 0.0004 20 1 1.1591 -3.2609 -1.9239 21 1 2.3650 -5.3987 -1.1320 22 1 0.6621 -5.1420 -0.6316 23 1 3.2230 -4.5621 0.9588 24 1 1.7430 -5.4132 1.5070 25 1 0.0310 -4.5407 2.2150 26 1 -0.6184 -3.0079 1.5651 27 1 0.0217 -1.7902 3.4576 28 1 -0.0399 -3.3956 4.2505 29 1 2.2565 -1.9790 4.3302 30 1 2.3308 -3.7391 3.9890 31 1 2.4128 -1.4060 1.9973 32 1 3.4961 -2.8294 2.0850 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259631418.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:53 Heat of formation + Delta-G solvation = -28.578401 kcal Electronic energy + Delta-G solvation = -13176.445417 eV Core-core repulsion = 11135.168248 eV Total energy + Delta-G solvation = -2041.277170 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.59634 -36.27362 -34.62581 -30.47054 -30.20043 -29.41869 -26.39354 -23.68038 -22.07081 -21.46405 -19.51232 -17.95903 -17.16966 -16.32295 -15.99818 -15.62560 -15.16854 -14.36199 -13.91014 -13.84905 -13.25770 -12.75736 -12.74655 -12.65653 -12.38114 -12.07915 -11.84736 -11.69152 -11.53635 -11.22434 -11.06258 -10.90670 -10.67396 -10.50914 -9.02878 -8.03690 -6.09106 1.40289 1.42045 1.51603 2.44640 3.15062 3.80536 3.91342 3.99344 4.08828 4.35355 4.44993 4.58013 4.79027 4.79608 4.86051 4.95956 5.04497 5.06902 5.11741 5.21657 5.34793 5.41348 5.48005 5.53892 5.65429 5.74091 5.80878 5.97196 6.32129 6.66415 6.72751 7.06105 7.51856 8.99943 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.033023 B = 0.016178 C = 0.013159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.689664 B = 1730.278493 C = 2127.282281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.474 4.474 8 H 0.045 0.955 9 C 0.187 3.813 10 H 0.011 0.989 11 N -0.687 5.687 12 C 0.034 3.966 13 C -0.104 4.104 14 C -0.069 4.069 15 C -0.104 4.104 16 C -0.115 4.115 17 C -0.118 4.118 18 C -0.104 4.104 19 H 0.258 0.742 20 H 0.318 0.682 21 H 0.080 0.920 22 H 0.031 0.969 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.042 -7.264 5.098 9.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.080 3.920 10 H 0.029 0.971 11 N -0.316 5.316 12 C -0.095 4.095 13 C -0.142 4.142 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.142 4.142 19 H 0.068 0.932 20 H 0.131 0.869 21 H 0.099 0.901 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.618 -7.030 5.196 9.126 hybrid contribution -0.871 1.046 -0.438 1.430 sum 1.747 -5.984 4.758 7.842 Atomic orbital electron populations 1.70015 1.07099 1.26933 1.52991 1.25647 0.95554 1.02050 0.95359 0.85750 0.78983 0.80093 0.78044 1.20581 1.21155 1.19100 1.21057 0.92562 0.90826 1.46913 0.93654 1.20087 0.94107 0.90732 0.87092 0.97060 1.63428 1.56251 1.04372 1.07508 1.23066 0.98684 0.91570 0.96182 1.22578 1.00108 0.96215 0.95263 1.21483 0.94733 0.94743 0.96029 1.22161 0.96437 0.99667 0.95923 1.22292 0.96858 0.99550 0.96539 1.22544 0.95007 1.01264 0.96715 1.22471 0.96710 1.01566 0.93403 0.93246 0.86882 0.90136 0.95118 0.91883 0.90107 0.91027 0.95011 0.94225 0.90237 0.91986 0.90491 0.91556 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 12.63 21.45 0.27 -54.35 16 2 C 0.01 0.66 5.45 84.65 0.46 1.12 16 3 Si 0.94 44.49 29.54 68.60 2.03 46.52 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.47 -26.14 5.77 25.60 0.15 -26.00 16 8 H 0.05 2.56 7.65 -2.91 -0.02 2.54 16 9 C 0.19 9.42 3.26 44.00 0.14 9.56 16 10 H 0.01 0.65 5.97 -2.38 -0.01 0.64 16 11 N -0.69 -30.93 7.14 -484.40 -3.46 -34.40 16 12 C 0.03 1.24 7.56 86.70 0.66 1.89 16 13 C -0.10 -3.65 6.16 31.59 0.19 -3.46 16 14 C -0.07 -2.86 0.82 -51.66 -0.04 -2.90 16 15 C -0.10 -4.02 6.15 31.12 0.19 -3.83 16 16 C -0.11 -4.00 6.85 31.77 0.22 -3.78 16 17 C -0.12 -3.91 6.92 31.98 0.22 -3.69 16 18 C -0.10 -4.29 5.22 31.46 0.16 -4.13 16 19 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 20 H 0.32 14.03 8.92 -89.69 -0.80 13.23 16 21 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 22 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 2.20 7.42 -2.39 -0.02 2.19 16 24 H 0.08 2.38 7.35 -2.38 -0.02 2.36 16 25 H 0.07 2.34 7.25 -2.39 -0.02 2.32 16 26 H 0.03 1.41 7.14 -2.39 -0.02 1.39 16 27 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 3.25 5.68 -2.39 -0.01 3.23 16 32 H 0.05 1.90 7.40 -2.38 -0.02 1.89 16 Total: -1.00 -60.25 246.72 1.49 -58.77 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.30 Total: 18.67 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 2.35 Total: -35.21 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -3.19 Total: -88.74 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.25 1.49 -58.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259631418.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.187 kcal (2) G-P(sol) polarization free energy of solvation -60.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds