Wall clock time and date at job start Mon Mar 30 2020 02:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99825 * 2 1 4 4 H 1.48500 * 109.46747 * 269.99314 * 3 2 1 5 5 H 1.48496 * 109.47463 * 29.99935 * 3 2 1 6 6 H 1.48509 * 109.46903 * 150.00092 * 3 2 1 7 7 C 1.37870 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 180.02562 * 7 2 1 9 9 C 1.51768 * 120.00130 * 0.02562 * 7 2 1 10 10 H 1.09071 * 107.11050 * 298.88136 * 9 7 2 11 11 C 1.52313 * 108.46419 * 180.02562 * 9 7 2 12 12 C 1.52296 * 112.67323 * 195.37861 * 11 9 7 13 13 H 1.10059 * 108.72111 * 170.89253 * 12 11 9 14 14 C 1.52382 * 111.57241 * 290.71826 * 12 11 9 15 15 C 1.52195 * 112.47306 * 69.00438 * 14 12 11 16 16 C 1.52243 * 112.64153 * 45.03065 * 15 14 12 17 17 N 1.45804 * 112.52196 * 313.56169 * 16 15 14 18 18 C 1.45770 * 114.08936 * 289.04927 * 17 16 15 19 19 C 1.46534 * 112.06196 * 57.61927 * 17 16 15 20 20 H 0.96999 * 119.99634 * 0.02562 * 1 2 3 21 21 H 1.09737 * 109.07068 * 74.04678 * 11 9 7 22 22 H 1.09689 * 109.16113 * 316.86155 * 11 9 7 23 23 H 1.09721 * 109.09974 * 190.30694 * 14 12 11 24 24 H 1.09669 * 109.16152 * 307.56321 * 14 12 11 25 25 H 1.08707 * 110.85896 * 280.20021 * 15 14 12 26 26 H 1.10552 * 108.01960 * 164.14575 * 15 14 12 27 27 H 1.09657 * 109.11779 * 192.09880 * 16 15 14 28 28 H 1.09697 * 109.06236 * 74.89994 * 16 15 14 29 29 H 1.09672 * 109.25917 * 309.40333 * 18 17 16 30 30 H 1.09658 * 109.26850 * 191.96998 * 18 17 16 31 31 H 1.08872 * 109.91042 * 175.82149 * 19 17 16 32 32 H 1.08848 * 109.95209 * 54.69609 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2457 -2.5084 0.0005 10 1 0.6488 -2.5343 0.9131 11 6 2.2557 -3.6485 0.0018 12 6 1.6310 -4.9865 -0.3707 13 1 2.4350 -5.7251 -0.5101 14 6 0.6909 -5.4886 0.7184 15 6 -0.5690 -4.6429 0.8347 16 6 -1.1857 -4.3207 -0.5195 17 7 -0.1964 -3.8680 -1.4902 18 6 0.3357 -2.5378 -1.2212 19 6 0.8685 -4.8542 -1.6915 20 1 -0.4849 0.8401 -0.0004 21 1 2.7060 -3.7274 0.9994 22 1 3.0609 -3.4169 -0.7061 23 1 0.4097 -6.5263 0.4996 24 1 1.2190 -5.4849 1.6796 25 1 -0.3740 -3.7331 1.3968 26 1 -1.3123 -5.2152 1.4197 27 1 -1.9486 -3.5436 -0.3909 28 1 -1.6878 -5.2159 -0.9066 29 1 -0.4960 -1.8404 -1.0642 30 1 0.8989 -2.1898 -2.0954 31 1 1.5452 -4.5147 -2.4739 32 1 0.4376 -5.8155 -1.9654 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259662901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:10 Heat of formation + Delta-G solvation = -15.052214 kcal Electronic energy + Delta-G solvation = -13267.362936 eV Core-core repulsion = 11226.672306 eV Total energy + Delta-G solvation = -2040.690630 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44424 -33.63890 -32.38512 -31.41164 -29.57493 -25.37242 -24.87935 -22.66798 -21.20550 -20.02518 -17.58365 -16.18077 -15.18244 -14.58012 -14.04836 -13.84084 -13.67653 -13.07079 -12.34675 -12.15794 -12.00835 -11.53333 -10.95825 -10.88518 -10.66458 -10.58974 -10.40905 -10.10413 -9.96536 -9.79067 -9.70492 -9.01189 -8.65354 -8.22773 -7.03695 -5.97682 -4.01730 3.31230 3.37994 3.41024 4.44209 4.96084 5.32717 5.33322 5.41914 5.51665 5.81094 5.88657 5.98459 6.11835 6.18795 6.35554 6.39448 6.52337 6.58012 6.62801 6.69026 6.86412 6.95217 7.04003 7.11486 7.41843 7.68671 7.94510 8.02484 8.16442 8.33286 8.55616 9.02213 9.61526 11.08519 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.054340 B = 0.012299 C = 0.011603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.151990 B = 2275.996574 C = 2412.595190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.013 3.987 10 H 0.034 0.966 11 C -0.095 4.095 12 C -0.122 4.122 13 H 0.051 0.949 14 C -0.097 4.097 15 C -0.152 4.152 16 C 0.078 3.922 17 N -0.559 5.559 18 C 0.074 3.926 19 C 0.072 3.928 20 H 0.260 0.740 21 H 0.038 0.962 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -8.102 -0.517 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.071 0.929 9 C -0.006 4.006 10 H 0.051 0.949 11 C -0.133 4.133 12 C -0.142 4.142 13 H 0.070 0.930 14 C -0.135 4.135 15 C -0.191 4.191 16 C -0.050 4.050 17 N -0.280 5.280 18 C -0.052 4.052 19 C -0.056 4.056 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.690 -7.918 -0.929 8.002 hybrid contribution 0.991 0.888 0.884 1.598 sum 0.301 -7.030 -0.046 7.037 Atomic orbital electron populations 1.69855 1.05766 1.26354 1.51198 1.24964 0.94894 0.98985 0.95193 0.86612 0.79816 0.83616 0.78069 1.20700 1.21291 1.20094 1.21504 0.92731 0.90589 1.50391 0.92902 1.19217 0.93609 0.91989 0.95820 0.94854 1.21405 0.98834 0.93532 0.99506 1.21564 0.97455 0.98214 0.96989 0.93029 1.21190 0.96079 0.97765 0.98489 1.22013 0.96727 1.01027 0.99320 1.21548 0.94571 0.99392 0.89523 1.60358 1.16203 1.04228 1.47246 1.22026 1.00141 0.85750 0.97286 1.21822 0.93004 0.95194 0.95603 0.93025 0.94289 0.93567 0.93612 0.93095 0.90534 0.93836 0.91487 0.92986 0.88289 0.93325 0.91475 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 11.24 55.43 0.62 -24.70 16 2 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.17 8.37 -33.92 -0.28 -14.45 16 8 H 0.05 1.46 7.69 -52.49 -0.40 1.05 16 9 C 0.01 0.33 1.68 -91.92 -0.15 0.18 16 10 H 0.03 0.90 5.65 -51.89 -0.29 0.61 16 11 C -0.10 -2.04 4.64 -27.44 -0.13 -2.17 16 12 C -0.12 -2.22 2.91 -91.26 -0.27 -2.48 16 13 H 0.05 0.84 8.23 -51.33 -0.42 0.42 16 14 C -0.10 -1.65 5.38 -27.46 -0.15 -1.80 16 15 C -0.15 -2.73 5.13 -27.53 -0.14 -2.87 16 16 C 0.08 1.46 5.76 -4.80 -0.03 1.43 16 17 N -0.56 -11.50 4.78 -236.54 -1.13 -12.63 16 18 C 0.07 1.80 4.60 -4.76 -0.02 1.78 16 19 C 0.07 1.32 5.70 -3.98 -0.02 1.30 16 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.04 0.83 8.20 -51.51 -0.42 0.41 16 22 H 0.05 1.00 8.00 -51.54 -0.41 0.59 16 23 H 0.05 0.68 8.20 -51.52 -0.42 0.26 16 24 H 0.05 0.84 8.20 -51.55 -0.42 0.42 16 25 H 0.08 1.59 5.71 -52.09 -0.30 1.29 16 26 H 0.04 0.68 8.27 -51.04 -0.42 0.25 16 27 H 0.07 1.29 8.11 -51.56 -0.42 0.88 16 28 H 0.05 0.85 8.20 -51.53 -0.42 0.43 16 29 H 0.10 2.66 6.20 -51.55 -0.32 2.34 16 30 H 0.05 1.24 8.05 -51.56 -0.42 0.83 16 31 H 0.07 1.22 8.13 -52.00 -0.42 0.80 16 32 H 0.06 0.93 8.13 -52.01 -0.42 0.51 16 LS Contribution 239.62 15.07 3.61 3.61 Total: -1.00 -27.68 239.62 -8.28 -35.96 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.07 Total: -1.12 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -1.29 Total: -17.51 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.51 Total: -37.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.68 -8.28 -35.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259662901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.909 kcal (2) G-P(sol) polarization free energy of solvation -27.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds