Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00086 * 2 1 4 4 H 1.07997 * 120.00165 * 203.04921 * 3 2 1 5 5 C 1.38814 * 120.00301 * 23.04486 * 3 2 1 6 6 N 1.31625 * 119.99401 * 12.93262 * 5 3 2 7 7 Si 1.86793 * 120.00375 * 192.93124 * 5 3 2 8 8 H 1.48497 * 109.47546 * 90.00267 * 7 5 3 9 9 H 1.48508 * 109.47095 * 210.00333 * 7 5 3 10 10 H 1.48505 * 109.47299 * 329.99694 * 7 5 3 11 11 C 1.46504 * 119.99865 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47026 * 89.99877 * 11 2 1 13 13 C 1.50697 * 109.47441 * 179.97438 * 12 11 2 14 14 C 1.34662 * 126.59132 * 275.04810 * 13 12 11 15 15 N 1.34137 * 108.02114 * 179.74065 * 14 13 12 16 16 C 1.30502 * 109.25356 * 0.36656 * 15 14 13 17 17 N 1.35043 * 108.69602 * 359.62899 * 16 15 14 18 18 H 0.97008 * 126.39052 * 180.24858 * 17 16 15 19 19 H 1.09004 * 109.46719 * 275.11883 * 1 2 3 20 20 H 1.09000 * 109.47164 * 35.12283 * 1 2 3 21 21 H 1.09001 * 109.47007 * 155.12311 * 1 2 3 22 22 H 0.97003 * 119.99606 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47170 * 329.99930 * 11 2 1 24 24 H 1.08997 * 109.47176 * 209.99345 * 11 2 1 25 25 H 1.09001 * 109.47102 * 60.00012 * 12 11 2 26 26 H 1.09000 * 109.47207 * 299.99773 * 12 11 2 27 27 H 1.08000 * 125.99370 * 359.91719 * 14 13 12 28 28 H 1.07993 * 125.64540 * 179.89873 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3159 4.0073 0.1455 8 1 1.7988 4.5534 -1.1349 9 1 1.9760 4.9363 1.2531 10 1 3.7909 3.8577 0.0601 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2065 -3.0146 -1.4440 14 6 4.5406 -3.1708 -1.3491 15 7 4.8080 -4.4848 -1.3816 16 6 3.6906 -5.1485 -1.5008 17 7 2.6667 -4.2688 -1.5401 18 1 1.7246 -4.4854 -1.6211 19 1 -0.3633 0.0917 1.0236 20 1 -0.3633 0.8405 -0.5912 21 1 -0.3633 -0.9323 -0.4323 22 1 -0.0149 3.0662 1.4751 23 1 1.6084 -2.0286 0.5129 24 1 3.1499 -1.1387 0.5132 25 1 3.0415 -0.9499 -1.9568 26 1 1.5000 -1.8399 -1.9571 27 1 5.2678 -2.3773 -1.2595 28 1 3.5996 -6.2232 -1.5543 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787103.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = 73.658818 kcal Electronic energy + Delta-G solvation = -11932.368546 eV Core-core repulsion = 9791.984372 eV Total energy + Delta-G solvation = -2140.384175 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.75262 -35.91611 -32.81531 -31.98147 -30.41680 -27.27378 -25.85030 -23.66830 -21.32747 -20.78685 -20.19058 -17.53375 -16.67344 -15.04811 -14.61699 -14.38214 -13.67032 -13.53559 -13.15467 -12.88124 -12.38105 -12.04807 -11.27244 -10.90786 -10.84280 -10.53057 -10.30304 -9.92264 -9.87886 -9.77908 -9.66130 -8.58385 -8.08867 -6.74386 -5.72506 -3.19974 2.31101 3.35682 3.38825 3.40359 3.45628 3.47013 4.50152 4.86529 5.20149 5.42678 5.46798 5.71370 5.82079 5.95922 6.14530 6.26037 6.38867 6.68916 6.80690 6.88531 7.02824 7.34298 7.58253 7.70583 7.81072 8.27583 8.39560 9.23365 9.86374 10.35121 11.32383 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.065277 B = 0.007948 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.839250 B = 3522.125705 C = 3839.252837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.257 4.257 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.160 3.840 12 C -0.070 4.070 13 C 0.005 3.995 14 C -0.039 4.039 15 N -0.496 5.496 16 C 0.163 3.837 17 N -0.570 5.570 18 H 0.416 0.584 19 H 0.031 0.969 20 H 0.041 0.959 21 H -0.005 1.005 22 H 0.252 0.748 23 H 0.032 0.968 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.167 0.833 28 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -10.560 -5.019 11.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.325 5.325 3 C -0.386 4.386 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.031 3.969 12 C -0.112 4.112 13 C -0.112 4.112 14 C -0.186 4.186 15 N -0.216 5.216 16 C -0.121 4.121 17 N -0.174 5.174 18 H 0.254 0.746 19 H 0.050 0.950 20 H 0.060 0.940 21 H 0.014 0.986 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.185 0.815 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.223 -10.736 -4.862 11.993 hybrid contribution -0.968 1.106 -0.243 1.489 sum 1.256 -9.630 -5.105 10.971 Atomic orbital electron populations 1.20799 0.82738 0.95219 0.99512 1.43932 1.01819 1.00722 1.85995 1.19224 0.98365 0.85524 1.35505 0.91195 1.25041 0.97899 0.98614 0.98102 1.70075 1.19529 1.27209 1.38569 0.86238 0.78859 0.84011 0.77346 1.21516 1.21771 1.20354 1.20677 0.96433 0.88166 0.91595 1.20984 0.98333 0.89282 1.02591 1.21731 0.94913 0.86907 1.07620 1.22074 0.93551 0.93483 1.09488 1.70210 1.27241 1.05012 1.19104 1.24800 0.82527 0.97188 1.07536 1.43325 1.10472 1.06860 1.56743 0.74637 0.95045 0.94041 0.98639 0.93757 0.95009 0.92948 0.89570 0.92122 0.81544 0.78162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.98 59.85 0.54 4.50 15 2 N -0.60 -15.05 2.92 -181.12 -0.53 -15.58 15 3 C -0.26 -7.02 9.65 -15.06 -0.15 -7.16 15 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 15 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 15 6 N -0.91 -26.57 10.71 55.49 0.59 -25.98 15 7 Si 0.91 21.83 29.57 -169.99 -5.03 16.80 15 8 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 11 C 0.16 3.25 5.63 -4.04 -0.02 3.23 15 12 C -0.07 -1.20 6.10 -27.88 -0.17 -1.37 15 13 C 0.00 0.08 6.49 -81.61 -0.53 -0.45 15 14 C -0.04 -0.64 11.79 -17.81 -0.21 -0.85 15 15 N -0.50 -8.01 11.25 -14.67 -0.17 -8.18 15 16 C 0.16 2.05 13.04 -90.37 -1.18 0.87 15 17 N -0.57 -7.08 6.15 -10.30 -0.06 -7.14 15 18 H 0.42 3.86 8.96 -40.82 -0.37 3.49 15 19 H 0.03 0.83 7.34 -51.93 -0.38 0.45 15 20 H 0.04 1.08 7.34 -51.93 -0.38 0.70 15 21 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 15 22 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.03 0.62 8.07 -51.93 -0.42 0.20 15 24 H 0.05 1.10 8.04 -51.93 -0.42 0.69 15 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.17 2.55 8.06 -52.49 -0.42 2.13 15 28 H 0.20 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 245.07 15.07 3.69 3.69 Total: -1.00 -31.81 245.07 -6.93 -38.74 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -3.62 Total: -1.07 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.81 Total: -1.28 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.16 Total: -56.88 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -31.81 -6.93 -38.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787103.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.395 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds