Wall clock time and date at job start Mon Mar 30 2020 02:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00086 * 2 1 4 4 H 1.07997 * 120.00165 * 203.04921 * 3 2 1 5 5 C 1.38814 * 120.00301 * 23.04486 * 3 2 1 6 6 N 1.31625 * 119.99401 * 12.93262 * 5 3 2 7 7 Si 1.86793 * 120.00375 * 192.93124 * 5 3 2 8 8 H 1.48497 * 109.47546 * 90.00267 * 7 5 3 9 9 H 1.48508 * 109.47095 * 210.00333 * 7 5 3 10 10 H 1.48505 * 109.47299 * 329.99694 * 7 5 3 11 11 C 1.46504 * 119.99865 * 180.02562 * 2 1 3 12 12 C 1.53000 * 109.47026 * 89.99877 * 11 2 1 13 13 C 1.50697 * 109.47441 * 179.97438 * 12 11 2 14 14 C 1.34662 * 126.59132 * 275.04810 * 13 12 11 15 15 N 1.34137 * 108.02114 * 179.74065 * 14 13 12 16 16 C 1.30502 * 109.25356 * 0.36656 * 15 14 13 17 17 N 1.35043 * 108.69602 * 359.62899 * 16 15 14 18 18 H 0.97008 * 126.39052 * 180.24858 * 17 16 15 19 19 H 1.09004 * 109.46719 * 275.11883 * 1 2 3 20 20 H 1.09000 * 109.47164 * 35.12283 * 1 2 3 21 21 H 1.09001 * 109.47007 * 155.12311 * 1 2 3 22 22 H 0.97003 * 119.99606 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47170 * 329.99930 * 11 2 1 24 24 H 1.08997 * 109.47176 * 209.99345 * 11 2 1 25 25 H 1.09001 * 109.47102 * 60.00012 * 12 11 2 26 26 H 1.09000 * 109.47207 * 299.99773 * 12 11 2 27 27 H 1.08000 * 125.99370 * 359.91719 * 14 13 12 28 28 H 1.07993 * 125.64540 * 179.89873 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3159 4.0073 0.1455 8 1 1.7988 4.5534 -1.1349 9 1 1.9760 4.9363 1.2531 10 1 3.7909 3.8577 0.0601 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 6 3.2065 -3.0146 -1.4440 14 6 4.5406 -3.1708 -1.3491 15 7 4.8080 -4.4848 -1.3816 16 6 3.6906 -5.1485 -1.5008 17 7 2.6667 -4.2688 -1.5401 18 1 1.7246 -4.4854 -1.6211 19 1 -0.3633 0.0917 1.0236 20 1 -0.3633 0.8405 -0.5912 21 1 -0.3633 -0.9323 -0.4323 22 1 -0.0149 3.0662 1.4751 23 1 1.6084 -2.0286 0.5129 24 1 3.1499 -1.1387 0.5132 25 1 3.0415 -0.9499 -1.9568 26 1 1.5000 -1.8399 -1.9571 27 1 5.2678 -2.3773 -1.2595 28 1 3.5996 -6.2232 -1.5543 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787103.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:35 Heat of formation + Delta-G solvation = 53.544066 kcal Electronic energy + Delta-G solvation = -11933.240787 eV Core-core repulsion = 9791.984372 eV Total energy + Delta-G solvation = -2141.256416 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.86026 -37.76083 -34.42443 -33.25669 -32.13523 -28.71349 -27.88070 -25.32750 -22.60130 -22.26694 -21.51159 -18.71346 -18.63071 -16.92317 -15.91417 -15.77073 -15.36468 -15.08219 -14.62622 -14.29323 -13.98643 -13.64307 -13.01820 -12.77847 -12.74343 -12.39932 -12.12559 -11.90018 -11.64272 -10.91307 -10.86874 -10.64697 -9.33662 -8.72836 -7.82056 -5.32036 1.19357 1.48621 1.49075 1.58207 2.25961 2.35725 2.53013 3.31678 3.64056 3.95339 4.15409 4.31736 4.58685 4.61964 4.71444 4.79676 4.84138 4.97444 5.22703 5.42249 5.47244 5.64367 5.71210 5.84132 6.33655 6.65921 7.16013 7.18589 7.87133 8.30365 9.20869 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.065277 B = 0.007948 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.839250 B = 3522.125705 C = 3839.252837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.620 5.620 3 C -0.263 4.263 4 H 0.073 0.927 5 C -0.054 4.054 6 N -0.941 5.941 7 Si 0.968 3.032 8 H -0.285 1.285 9 H -0.296 1.296 10 H -0.268 1.268 11 C 0.161 3.839 12 C -0.048 4.048 13 C -0.008 4.008 14 C -0.056 4.056 15 N -0.537 5.537 16 C 0.187 3.813 17 N -0.559 5.559 18 H 0.433 0.567 19 H 0.003 0.997 20 H 0.016 0.984 21 H 0.034 0.966 22 H 0.248 0.752 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.163 0.837 28 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 -12.036 -5.875 13.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.343 5.343 3 C -0.393 4.393 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.212 1.212 9 H -0.223 1.223 10 H -0.192 1.192 11 C 0.034 3.966 12 C -0.090 4.090 13 C -0.125 4.125 14 C -0.202 4.202 15 N -0.257 5.257 16 C -0.097 4.097 17 N -0.164 5.164 18 H 0.274 0.726 19 H 0.021 0.979 20 H 0.034 0.966 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.181 0.819 28 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.466 -12.244 -5.736 13.744 hybrid contribution -1.014 1.407 0.019 1.734 sum 1.451 -10.837 -5.717 12.339 Atomic orbital electron populations 1.20561 0.82720 0.96077 0.97647 1.44178 1.02183 1.01670 1.86272 1.19559 0.98586 0.86702 1.34485 0.90946 1.25802 0.98656 1.01938 0.98463 1.70238 1.20942 1.27607 1.39989 0.85241 0.78518 0.79763 0.76797 1.21217 1.22285 1.19222 1.20776 0.95399 0.86601 0.93798 1.20525 0.98780 0.89943 0.99723 1.21316 0.94517 0.87385 1.09290 1.22204 0.94106 0.94058 1.09845 1.70217 1.29216 1.04956 1.21303 1.25722 0.81406 0.98820 1.03775 1.43270 1.11563 1.05659 1.55870 0.72622 0.97857 0.96557 0.94748 0.94300 0.93888 0.94224 0.90845 0.91167 0.81940 0.73547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.51 8.98 127.77 1.15 9.66 15 2 N -0.62 -30.79 2.92 -726.93 -2.12 -32.92 15 3 C -0.26 -14.40 9.65 84.03 0.81 -13.59 15 4 H 0.07 3.84 7.86 -2.91 -0.02 3.82 15 5 C -0.05 -3.02 5.10 84.86 0.43 -2.58 15 6 N -0.94 -55.94 10.71 21.65 0.23 -55.71 15 7 Si 0.97 45.13 29.57 68.60 2.03 47.16 15 8 H -0.29 -13.07 7.11 99.48 0.71 -12.36 15 9 H -0.30 -13.93 7.11 99.48 0.71 -13.22 15 10 H -0.27 -11.86 7.11 99.48 0.71 -11.16 15 11 C 0.16 6.40 5.63 86.38 0.49 6.88 15 12 C -0.05 -1.58 6.10 29.85 0.18 -1.40 15 13 C -0.01 -0.23 6.49 40.95 0.27 0.04 15 14 C -0.06 -1.76 11.79 83.52 0.98 -0.77 15 15 N -0.54 -16.23 11.25 -200.31 -2.25 -18.48 15 16 C 0.19 4.01 13.04 180.26 2.35 6.36 15 17 N -0.56 -12.01 6.15 -186.51 -1.15 -13.16 15 18 H 0.43 6.33 8.96 -92.70 -0.83 5.50 15 19 H 0.00 0.17 7.34 -2.38 -0.02 0.15 15 20 H 0.02 0.84 7.34 -2.39 -0.02 0.82 15 21 H 0.03 1.37 8.03 -2.39 -0.02 1.35 15 22 H 0.25 14.32 8.31 -92.71 -0.77 13.54 15 23 H 0.04 1.60 8.07 -2.39 -0.02 1.58 15 24 H 0.04 1.66 8.04 -2.39 -0.02 1.64 15 25 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.16 5.02 8.06 -2.91 -0.02 4.99 15 28 H 0.25 2.67 8.06 -2.91 -0.02 2.65 15 Total: -1.00 -68.22 245.07 3.71 -64.50 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: 0.32 Total: 4.00 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 6.66 Total: 4.60 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -5.29 Total: -120.26 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.22 3.71 -64.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787103.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.048 kcal (2) G-P(sol) polarization free energy of solvation -68.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds