Wall clock time and date at job start Mon Mar 30 2020 02:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46474 * 2 1 4 4 N 1.46505 * 109.46813 * 180.02562 * 3 2 1 5 5 C 1.35766 * 126.47805 * 265.18583 * 4 3 2 6 6 N 1.30876 * 109.79010 * 180.28402 * 5 4 3 7 7 C 1.33582 * 110.05497 * 359.72132 * 6 5 4 8 8 N 1.38670 * 126.32170 * 179.97438 * 7 6 5 9 9 C 1.38693 * 126.48313 * 85.00089 * 4 3 2 10 10 C 1.39726 * 127.12342 * 359.97438 * 9 4 3 11 11 H 1.08002 * 119.99575 * 33.85655 * 10 9 4 12 12 C 1.39941 * 120.00161 * 213.85591 * 10 9 4 13 13 N 1.31018 * 119.99842 * 24.14754 * 12 10 9 14 14 Si 1.86798 * 120.00071 * 204.14469 * 12 10 9 15 15 H 1.48496 * 109.47259 * 179.97438 * 14 12 10 16 16 H 1.48499 * 109.47130 * 299.99890 * 14 12 10 17 17 H 1.48496 * 109.47015 * 59.99951 * 14 12 10 18 18 H 1.09007 * 109.46817 * 60.00393 * 1 2 3 19 19 H 1.09000 * 109.46524 * 179.97438 * 1 2 3 20 20 H 1.08991 * 109.47563 * 299.99604 * 1 2 3 21 21 H 1.08997 * 109.47295 * 240.00738 * 2 1 3 22 22 H 1.08999 * 109.47317 * 119.99999 * 2 1 3 23 23 H 1.09002 * 109.47234 * 60.00406 * 3 2 1 24 24 H 1.08998 * 109.47419 * 299.99435 * 3 2 1 25 25 H 1.08000 * 125.11028 * 0.02562 * 5 4 3 26 26 H 0.96995 * 120.00234 * 189.05967 * 8 7 6 27 27 H 0.97006 * 119.99636 * 9.06041 * 8 7 6 28 28 H 0.96999 * 120.00355 * 2.72959 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3125 1.5342 1.0869 6 7 5.5660 1.5089 0.7113 7 6 5.6439 1.3953 -0.6174 8 7 6.8072 1.3376 -1.3700 9 6 4.3291 1.3457 -1.1119 10 6 3.9342 1.2286 -2.4470 11 1 3.0363 1.7213 -2.7897 12 6 4.7021 0.4730 -3.3402 13 7 5.4797 -0.4810 -2.8909 14 14 4.6186 0.8245 -5.1729 15 1 5.5202 -0.1070 -5.8972 16 1 3.2249 0.6363 -5.6499 17 1 5.0446 2.2239 -5.4284 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3634 0.5137 0.8899 21 1 1.8934 -0.5137 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 1.6766 1.9564 0.8900 24 1 1.6766 1.9564 -0.8900 25 1 3.9719 1.6196 2.1082 26 1 6.7618 1.3871 -2.3376 27 1 7.6664 1.2478 -0.9287 28 1 5.4933 -0.6900 -1.9438 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:39 Heat of formation + Delta-G solvation = 38.633782 kcal Electronic energy + Delta-G solvation = -12464.772044 eV Core-core repulsion = 10322.869070 eV Total energy + Delta-G solvation = -2141.902974 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.95807 -34.96177 -33.85715 -32.07029 -30.21281 -27.75377 -25.29342 -23.89955 -21.38866 -19.72881 -19.31301 -17.34151 -15.64418 -14.88671 -14.57533 -14.09386 -13.93098 -13.51088 -13.01317 -12.40781 -12.29927 -11.98795 -11.67934 -11.14702 -11.02048 -10.98223 -10.36446 -10.29542 -9.80089 -9.19997 -8.75800 -8.41058 -7.81445 -6.93184 -5.94587 -3.94520 3.17717 3.27568 3.46529 3.66360 4.12094 4.29777 4.74739 5.26339 5.28897 5.38894 5.49138 5.60490 5.71230 5.96052 6.08323 6.18781 6.26036 6.46396 6.69630 6.88013 7.52094 7.73712 8.15041 8.23131 8.42033 8.96840 9.05886 9.32656 9.48964 10.02310 10.45277 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.028985 B = 0.016177 C = 0.011311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.783341 B = 1730.454591 C = 2474.776717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.132 3.868 4 N -0.482 5.482 5 C 0.068 3.932 6 N -0.511 5.511 7 C 0.154 3.846 8 N -0.854 5.854 9 C 0.130 3.870 10 C -0.532 4.532 11 H 0.061 0.939 12 C 0.035 3.965 13 N -0.817 5.817 14 Si 1.068 2.932 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.280 1.280 18 H 0.054 0.946 19 H 0.053 0.947 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.169 0.831 26 H 0.399 0.601 27 H 0.374 0.626 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 1.189 1.035 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.008 3.992 4 N -0.174 5.174 5 C -0.204 4.204 6 N -0.237 5.237 7 C -0.072 4.072 8 N -0.405 5.405 9 C 0.015 3.985 10 C -0.569 4.569 11 H 0.079 0.921 12 C -0.184 4.184 13 N -0.444 5.444 14 Si 0.893 3.107 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.205 1.205 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.069 0.931 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.093 0.907 25 H 0.186 0.814 26 H 0.229 0.771 27 H 0.200 0.800 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.407 0.773 0.266 5.469 hybrid contribution -1.139 0.393 0.980 1.553 sum -6.546 1.166 1.246 6.765 Atomic orbital electron populations 1.21688 0.95732 1.01480 1.01432 1.21843 0.95132 0.97377 1.03176 1.21296 0.79257 0.96842 1.01812 1.45421 1.04899 1.59836 1.07217 1.23497 0.85250 1.19754 0.91939 1.69080 1.19457 1.22404 1.12728 1.17695 0.86614 1.15244 0.87605 1.40597 1.03088 1.89711 1.07067 1.18188 0.87406 1.05885 0.87022 1.18861 1.13124 1.33481 0.91396 0.92106 1.26558 0.93147 0.91899 1.06761 1.70444 1.32853 1.20879 1.20219 0.83580 0.76953 0.76854 0.73297 1.20237 1.20887 1.20544 0.92655 0.92780 0.93081 0.90667 0.92202 0.91460 0.90670 0.81376 0.77061 0.80046 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 15 2 C -0.14 -2.34 6.26 -26.73 -0.17 -2.51 15 3 C 0.13 2.46 5.96 -4.04 -0.02 2.44 15 4 N -0.48 -11.40 2.82 -115.20 -0.32 -11.73 15 5 C 0.07 1.61 12.53 -89.40 -1.12 0.49 15 6 N -0.51 -13.60 11.19 -12.69 -0.14 -13.74 15 7 C 0.15 4.21 7.31 -153.78 -1.12 3.09 15 8 N -0.85 -21.34 8.00 31.56 0.25 -21.09 15 9 C 0.13 3.53 6.01 -83.33 -0.50 3.03 15 10 C -0.53 -14.32 8.87 -38.39 -0.34 -14.66 15 11 H 0.06 1.61 7.77 -52.49 -0.41 1.20 15 12 C 0.04 0.91 4.12 -17.26 -0.07 0.83 15 13 N -0.82 -22.27 11.96 55.55 0.66 -21.61 15 14 Si 1.07 22.31 30.00 -169.99 -5.10 17.21 15 15 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 16 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 18 H 0.05 0.70 8.14 -51.92 -0.42 0.28 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 22 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 23 H 0.07 1.05 8.13 -51.93 -0.42 0.63 15 24 H 0.07 1.42 7.86 -51.93 -0.41 1.01 15 25 H 0.17 3.30 8.06 -52.49 -0.42 2.88 15 26 H 0.40 10.00 6.78 -40.82 -0.28 9.72 15 27 H 0.37 8.52 8.95 -40.82 -0.37 8.15 15 28 H 0.29 8.61 6.77 -40.82 -0.28 8.34 15 LS Contribution 241.28 15.07 3.64 3.64 Total: -1.00 -30.27 241.28 -7.48 -37.75 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -3.49 Total: 18.40 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.98 Total: -8.82 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.45 Total: -68.17 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.10 Total: 17.21 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.27 -7.48 -37.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.381 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds