Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 111.00417 * 2 1 4 4 C 1.38103 * 111.00395 * 236.04474 * 2 1 3 5 5 N 1.36823 * 125.76925 * 59.69087 * 4 2 1 6 6 H 0.97000 * 125.74389 * 359.97438 * 5 4 2 7 7 C 1.38411 * 108.51700 * 179.83672 * 5 4 2 8 8 C 1.39797 * 126.07167 * 180.16777 * 7 5 4 9 9 H 1.07995 * 119.99922 * 161.98885 * 8 7 5 10 10 C 1.39703 * 119.99819 * 341.98581 * 8 7 5 11 11 N 1.31134 * 119.99880 * 166.95819 * 10 8 7 12 12 Si 1.86798 * 120.00385 * 346.95599 * 10 8 7 13 13 H 1.48500 * 109.46808 * 88.86779 * 12 10 8 14 14 H 1.48502 * 109.47301 * 208.86186 * 12 10 8 15 15 H 1.48496 * 109.47036 * 328.86724 * 12 10 8 16 16 C 1.39776 * 107.85360 * 0.43080 * 7 5 4 17 17 C 1.39064 * 125.77629 * 240.00796 * 4 2 1 18 18 N 1.40487 * 126.11548 * 0.02562 * 17 4 2 19 19 H 1.08993 * 109.47080 * 183.95024 * 1 2 3 20 20 H 1.09006 * 109.46540 * 63.94866 * 1 2 3 21 21 H 1.08997 * 109.47136 * 303.95938 * 1 2 3 22 22 H 1.09005 * 109.46631 * 60.00012 * 3 2 1 23 23 H 1.09004 * 109.47575 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47417 * 300.00238 * 3 2 1 25 25 H 0.96992 * 120.00350 * 180.02562 * 11 10 8 26 26 H 1.08001 * 126.29675 * 179.73871 * 16 7 5 27 27 H 0.96995 * 119.99883 * 0.02562 * 18 17 4 28 28 H 0.97004 * 119.99859 * 180.02562 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9640 -0.7201 -1.0694 5 7 1.7277 -0.4543 -2.3906 6 1 1.1837 0.2717 -2.7340 7 6 2.3979 -1.3938 -3.1547 8 6 2.4100 -1.4622 -4.5510 9 1 3.1748 -2.0326 -5.0570 10 6 1.4327 -0.7928 -5.2916 11 7 1.5812 -0.6391 -6.5854 12 14 -0.0856 -0.1167 -4.4390 13 1 0.1851 1.2655 -3.9685 14 1 -1.2234 -0.1008 -5.3932 15 1 -0.4256 -0.9773 -3.2775 16 6 3.0555 -2.2657 -2.2823 17 6 2.7819 -1.8417 -0.9855 18 7 3.2481 -2.4399 0.1970 19 1 -0.3633 -1.0252 0.0708 20 1 -0.3632 0.4514 -0.9233 21 1 -0.3633 0.5740 0.8524 22 1 1.6460 1.8947 0.8901 23 1 3.0852 1.3423 0.0005 24 1 1.6461 1.8948 -0.8899 25 1 0.9029 -0.1740 -7.0996 26 1 3.6639 -3.1127 -2.5630 27 1 3.0006 -2.0690 1.0584 28 1 3.8176 -3.2239 0.1521 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259813773.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = 27.588509 kcal Electronic energy + Delta-G solvation = -12506.610848 eV Core-core repulsion = 10364.228915 eV Total energy + Delta-G solvation = -2142.381933 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.39746 -37.44426 -35.50978 -34.54145 -30.60356 -29.62617 -28.47272 -26.68588 -23.53680 -21.53318 -20.37598 -19.74266 -18.14368 -16.88659 -16.51084 -16.01562 -15.68232 -15.17534 -14.96568 -14.48971 -14.30696 -13.44039 -13.25281 -13.04478 -12.77602 -12.65444 -12.60131 -12.24674 -11.88972 -11.41732 -11.11786 -9.60223 -9.01013 -8.89742 -7.81672 -6.23324 0.91902 1.11496 1.22617 1.59189 1.92636 2.42291 2.70355 3.22032 3.25826 3.70830 4.34499 4.35463 4.56699 4.61364 4.87557 4.92926 4.97173 5.13258 5.32511 5.48682 5.90434 6.07416 6.09423 6.19635 6.39596 6.66217 6.94859 7.20769 7.51372 7.64320 8.22105 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.037921 B = 0.015656 C = 0.012237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.194909 B = 1788.025889 C = 2287.615936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.444 5.444 3 C 0.026 3.974 4 C -0.030 4.030 5 N -0.609 5.609 6 H 0.382 0.618 7 C 0.223 3.777 8 C -0.472 4.472 9 H 0.074 0.926 10 C 0.042 3.958 11 N -0.857 5.857 12 Si 0.936 3.064 13 H -0.258 1.258 14 H -0.263 1.263 15 H -0.254 1.254 16 C -0.374 4.374 17 C 0.192 3.808 18 N -0.863 5.863 19 H 0.061 0.939 20 H 0.002 0.998 21 H 0.097 0.903 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.005 0.995 25 H 0.291 0.709 26 H 0.114 0.886 27 H 0.398 0.602 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 3.085 11.295 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.164 5.164 3 C -0.121 4.121 4 C -0.229 4.229 5 N -0.225 5.225 6 H 0.222 0.778 7 C 0.108 3.892 8 C -0.507 4.507 9 H 0.092 0.908 10 C -0.171 4.171 11 N -0.487 5.487 12 Si 0.761 3.239 13 H -0.185 1.185 14 H -0.188 1.188 15 H -0.178 1.178 16 C -0.401 4.401 17 C 0.084 3.916 18 N -0.408 5.408 19 H 0.079 0.921 20 H 0.020 0.980 21 H 0.116 0.884 22 H 0.114 0.886 23 H 0.080 0.920 24 H 0.024 0.976 25 H 0.102 0.898 26 H 0.132 0.868 27 H 0.226 0.774 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.316 3.068 11.476 12.333 hybrid contribution -0.835 0.752 -1.046 1.535 sum -4.151 3.820 10.430 11.858 Atomic orbital electron populations 1.22498 0.87476 1.02220 1.00047 1.59055 1.07539 1.13392 1.36456 1.22506 1.00741 0.88447 1.00377 1.17938 1.18853 1.06445 0.79645 1.42961 1.45800 1.26782 1.06912 0.77829 1.17930 0.92414 0.88174 0.90645 1.18484 1.13368 1.30130 0.88719 0.90834 1.26563 1.01157 0.93814 0.95517 1.69784 1.35411 1.35304 1.08195 0.86001 0.79237 0.79115 0.79578 1.18469 1.18838 1.17816 1.20303 1.20789 1.08098 0.90888 1.16771 0.95745 0.92142 0.86943 1.41380 1.60296 1.35380 1.03767 0.92056 0.97966 0.88412 0.88615 0.91962 0.97611 0.89818 0.86760 0.77352 0.77529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.50 127.69 1.21 1.99 15 2 N -0.44 -15.77 5.07 -748.61 -3.80 -19.57 15 3 C 0.03 0.82 9.52 127.69 1.22 2.03 15 4 C -0.03 -1.29 5.66 131.98 0.75 -0.55 15 5 N -0.61 -29.32 4.57 -182.86 -0.84 -30.16 15 6 H 0.38 17.71 4.38 -92.71 -0.41 17.30 15 7 C 0.22 11.89 6.18 38.85 0.24 12.13 15 8 C -0.47 -27.01 9.84 23.00 0.23 -26.78 15 9 H 0.07 4.50 8.06 -2.91 -0.02 4.48 15 10 C 0.04 2.30 5.52 85.15 0.47 2.77 15 11 N -0.86 -47.47 13.94 21.80 0.30 -47.16 15 12 Si 0.94 41.39 24.69 68.60 1.69 43.08 15 13 H -0.26 -10.66 6.82 99.48 0.68 -9.98 15 14 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 15 H -0.25 -11.58 6.75 99.48 0.67 -10.91 15 16 C -0.37 -18.60 10.86 22.86 0.25 -18.35 15 17 C 0.19 8.48 7.34 38.17 0.28 8.76 15 18 N -0.86 -29.26 9.18 -50.62 -0.46 -29.72 15 19 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 20 H 0.00 0.06 8.03 -2.38 -0.02 0.04 15 21 H 0.10 2.31 8.14 -2.39 -0.02 2.30 15 22 H 0.10 2.24 8.14 -2.38 -0.02 2.22 15 23 H 0.06 1.99 8.12 -2.38 -0.02 1.97 15 24 H 0.01 0.17 8.14 -2.39 -0.02 0.15 15 25 H 0.29 14.52 8.30 -92.71 -0.77 13.75 15 26 H 0.11 5.49 8.06 -2.91 -0.02 5.46 15 27 H 0.40 11.95 8.96 -92.71 -0.83 11.12 15 28 H 0.40 11.67 8.96 -92.71 -0.83 10.84 15 Total: -1.00 -61.55 237.97 0.60 -60.95 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.94 Total: 40.58 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 4.64 Total: -18.00 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -4.79 Total: -126.61 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.69 Total: 43.08 kcal Total: -61.55 0.60 -60.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259813773.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.542 kcal (2) G-P(sol) polarization free energy of solvation -61.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds