Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47740 * 2 1 4 4 C 1.50702 * 109.46844 * 119.99886 * 2 1 3 5 5 C 1.34674 * 126.59229 * 84.79439 * 4 2 1 6 6 N 1.34130 * 108.01738 * 179.97438 * 5 4 2 7 7 C 1.30496 * 109.25787 * 359.97438 * 6 5 4 8 8 N 1.35041 * 108.70255 * 359.77153 * 7 6 5 9 9 H 0.97000 * 126.40199 * 180.26522 * 8 7 6 10 10 N 1.46496 * 109.46966 * 239.99273 * 2 1 3 11 11 C 1.46500 * 120.00587 * 305.82606 * 10 2 1 12 12 C 1.36943 * 119.99812 * 125.82694 * 10 2 1 13 13 H 1.08005 * 119.99796 * 335.10223 * 12 10 2 14 14 C 1.38804 * 120.00001 * 154.82893 * 12 10 2 15 15 N 1.31620 * 120.00290 * 350.47869 * 14 12 10 16 16 Si 1.86805 * 120.00013 * 170.48033 * 14 12 10 17 17 H 1.48501 * 109.46809 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47318 * 119.99858 * 16 14 12 19 19 H 1.48497 * 109.47114 * 240.00084 * 16 14 12 20 20 H 1.08999 * 109.46823 * 60.00228 * 1 2 3 21 21 H 1.09002 * 109.47183 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46907 * 300.00455 * 1 2 3 23 23 H 1.07994 * 125.98962 * 359.96420 * 5 4 2 24 24 H 1.08001 * 125.64712 * 180.02562 * 7 6 5 25 25 H 1.09002 * 109.47222 * 264.84270 * 11 10 2 26 26 H 1.09000 * 109.46748 * 24.83750 * 11 10 2 27 27 H 1.08993 * 109.47090 * 144.84011 * 11 10 2 28 28 H 0.96998 * 119.99747 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2074 -2.0378 1.3759 6 7 2.6682 -2.2621 2.6155 7 6 2.7858 -1.1242 3.2434 8 7 2.4045 -0.1300 2.4130 9 1 2.3942 0.8183 2.6170 10 7 2.0183 -0.6907 -1.1961 11 6 1.5624 -2.0507 -1.4941 12 6 2.9010 -0.0652 -2.0356 13 1 2.9372 1.0136 -2.0745 14 6 3.7531 -0.8174 -2.8323 15 7 3.8482 -2.1174 -2.6498 16 14 4.7648 0.0153 -4.1637 17 1 4.4778 1.4723 -4.1650 18 1 6.2093 -0.2050 -3.8984 19 1 4.4112 -0.5596 -5.4865 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.0110 -2.7897 0.6261 24 1 3.1347 -0.9982 4.2577 25 1 2.2839 -2.7693 -1.1052 26 1 0.5928 -2.2196 -1.0257 27 1 1.4713 -2.1751 -2.5731 28 1 4.4433 -2.6431 -3.2069 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817998.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = 83.404487 kcal Electronic energy + Delta-G solvation = -12510.166439 eV Core-core repulsion = 10370.204868 eV Total energy + Delta-G solvation = -2139.961571 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.30160 -36.18302 -32.48149 -31.69399 -29.25587 -27.74968 -26.13181 -23.67226 -21.29458 -20.63442 -19.59391 -17.00699 -16.78917 -15.00711 -14.36850 -13.99083 -13.57670 -13.26972 -13.09729 -12.65514 -12.13078 -11.69607 -11.24523 -10.85781 -10.66526 -10.61815 -10.37115 -9.91554 -9.87338 -9.31231 -9.26743 -8.57454 -7.58142 -6.79454 -5.73452 -3.23903 2.77997 3.36341 3.43052 3.45300 3.74196 3.91342 4.47624 5.24487 5.40674 5.46012 5.62251 5.95346 6.07208 6.10810 6.27184 6.41640 6.56814 6.69185 6.89961 7.08392 7.38530 7.52668 7.75383 7.82218 8.02770 8.38747 8.75491 9.21111 9.82328 10.32827 11.29822 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044724 B = 0.011635 C = 0.011051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.905209 B = 2406.057721 C = 2533.132228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.238 3.762 3 H 0.065 0.935 4 C -0.012 4.012 5 C -0.026 4.026 6 N -0.500 5.500 7 C 0.148 3.852 8 N -0.574 5.574 9 H 0.410 0.590 10 N -0.581 5.581 11 C 0.155 3.845 12 C -0.262 4.262 13 H 0.068 0.932 14 C 0.008 3.992 15 N -0.899 5.899 16 Si 0.906 3.094 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.288 1.288 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.042 0.958 23 H 0.172 0.828 24 H 0.195 0.805 25 H 0.039 0.961 26 H 0.005 0.995 27 H 0.042 0.958 28 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 4.772 7.002 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.127 3.873 3 H 0.084 0.916 4 C -0.130 4.130 5 C -0.172 4.172 6 N -0.220 5.220 7 C -0.134 4.134 8 N -0.178 5.178 9 H 0.246 0.754 10 N -0.301 5.301 11 C 0.011 3.989 12 C -0.392 4.392 13 H 0.086 0.914 14 C -0.192 4.192 15 N -0.543 5.543 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.215 1.215 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.061 0.939 23 H 0.189 0.811 24 H 0.212 0.788 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.383 3.786 7.169 9.217 hybrid contribution 0.715 1.532 -0.803 1.872 sum -3.668 5.319 6.367 9.071 Atomic orbital electron populations 1.22179 0.96783 1.01835 1.00332 1.18850 0.91957 0.94530 0.81989 0.91636 1.23170 1.05760 0.95376 0.88652 1.22380 1.05866 0.94732 0.94232 1.70196 1.18483 1.26262 1.07040 1.24678 1.07076 0.83492 0.98191 1.43375 1.51854 1.09964 1.12644 0.75370 1.43946 1.51049 1.14891 1.20254 1.20974 0.93393 0.85652 0.98890 1.19247 1.12781 0.90937 1.16195 0.91374 1.25147 0.97474 0.95881 1.00689 1.70060 1.39384 1.04849 1.40008 0.86176 0.79926 0.78757 0.81599 1.20321 1.21694 1.21498 0.92221 0.92464 0.93928 0.81137 0.78803 0.94335 0.97633 0.93906 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.05 37.16 0.34 -2.26 15 2 C 0.24 4.83 3.26 -69.08 -0.23 4.60 15 3 H 0.07 1.30 7.87 -51.93 -0.41 0.89 15 4 C -0.01 -0.24 6.28 -81.60 -0.51 -0.75 15 5 C -0.03 -0.57 10.86 -17.81 -0.19 -0.76 15 6 N -0.50 -10.46 11.25 -14.67 -0.17 -10.63 15 7 C 0.15 2.46 13.04 -90.38 -1.18 1.29 15 8 N -0.57 -9.27 6.15 -10.30 -0.06 -9.33 15 9 H 0.41 4.98 8.96 -40.82 -0.37 4.61 15 10 N -0.58 -14.33 2.75 -174.82 -0.48 -14.81 15 11 C 0.16 3.77 6.92 59.85 0.41 4.19 15 12 C -0.26 -7.12 9.58 -15.06 -0.14 -7.26 15 13 H 0.07 1.80 7.81 -52.48 -0.41 1.39 15 14 C 0.01 0.21 5.17 -17.43 -0.09 0.12 15 15 N -0.90 -26.23 10.65 55.49 0.59 -25.64 15 16 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.06 1.00 6.47 -51.93 -0.34 0.66 15 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 15 23 H 0.17 3.96 5.18 -52.49 -0.27 3.69 15 24 H 0.20 2.27 8.06 -52.49 -0.42 1.85 15 25 H 0.04 1.03 5.75 -51.93 -0.30 0.73 15 26 H 0.01 0.11 6.12 -51.93 -0.32 -0.20 15 27 H 0.04 1.11 7.40 -51.93 -0.38 0.73 15 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 234.06 15.07 3.53 3.53 Total: -1.00 -31.92 234.06 -6.41 -38.32 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -3.19 Total: 2.67 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.59 Total: -0.84 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.12 Total: -60.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.92 -6.41 -38.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817998.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.729 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds