Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47740 * 2 1 4 4 C 1.50702 * 109.46844 * 119.99886 * 2 1 3 5 5 C 1.34674 * 126.59229 * 84.79439 * 4 2 1 6 6 N 1.34130 * 108.01738 * 179.97438 * 5 4 2 7 7 C 1.30496 * 109.25787 * 359.97438 * 6 5 4 8 8 N 1.35041 * 108.70255 * 359.77153 * 7 6 5 9 9 H 0.97000 * 126.40199 * 180.26522 * 8 7 6 10 10 N 1.46496 * 109.46966 * 239.99273 * 2 1 3 11 11 C 1.46500 * 120.00587 * 305.82606 * 10 2 1 12 12 C 1.36943 * 119.99812 * 125.82694 * 10 2 1 13 13 H 1.08005 * 119.99796 * 335.10223 * 12 10 2 14 14 C 1.38804 * 120.00001 * 154.82893 * 12 10 2 15 15 N 1.31620 * 120.00290 * 350.47869 * 14 12 10 16 16 Si 1.86805 * 120.00013 * 170.48033 * 14 12 10 17 17 H 1.48501 * 109.46809 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47318 * 119.99858 * 16 14 12 19 19 H 1.48497 * 109.47114 * 240.00084 * 16 14 12 20 20 H 1.08999 * 109.46823 * 60.00228 * 1 2 3 21 21 H 1.09002 * 109.47183 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46907 * 300.00455 * 1 2 3 23 23 H 1.07994 * 125.98962 * 359.96420 * 5 4 2 24 24 H 1.08001 * 125.64712 * 180.02562 * 7 6 5 25 25 H 1.09002 * 109.47222 * 264.84270 * 11 10 2 26 26 H 1.09000 * 109.46748 * 24.83750 * 11 10 2 27 27 H 1.08993 * 109.47090 * 144.84011 * 11 10 2 28 28 H 0.96998 * 119.99747 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2074 -2.0378 1.3759 6 7 2.6682 -2.2621 2.6155 7 6 2.7858 -1.1242 3.2434 8 7 2.4045 -0.1300 2.4130 9 1 2.3942 0.8183 2.6170 10 7 2.0183 -0.6907 -1.1961 11 6 1.5624 -2.0507 -1.4941 12 6 2.9010 -0.0652 -2.0356 13 1 2.9372 1.0136 -2.0745 14 6 3.7531 -0.8174 -2.8323 15 7 3.8482 -2.1174 -2.6498 16 14 4.7648 0.0153 -4.1637 17 1 4.4778 1.4723 -4.1650 18 1 6.2093 -0.2050 -3.8984 19 1 4.4112 -0.5596 -5.4865 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.0110 -2.7897 0.6261 24 1 3.1347 -0.9982 4.2577 25 1 2.2839 -2.7693 -1.1052 26 1 0.5928 -2.2196 -1.0257 27 1 1.4713 -2.1751 -2.5731 28 1 4.4433 -2.6431 -3.2069 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817998.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = 62.307815 kcal Electronic energy + Delta-G solvation = -12511.081259 eV Core-core repulsion = 10370.204868 eV Total energy + Delta-G solvation = -2140.876391 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.77089 -37.98330 -34.31892 -33.23743 -31.08059 -29.23794 -28.10536 -25.46938 -22.93172 -22.14940 -21.15372 -18.80282 -18.47080 -16.93150 -15.87218 -15.74034 -15.18644 -14.84003 -14.81633 -14.35917 -13.75013 -13.42911 -12.90794 -12.70512 -12.50697 -12.33652 -12.23224 -11.80917 -11.74804 -10.81377 -10.74960 -10.65088 -9.11861 -8.80786 -7.80963 -5.34117 1.32640 1.46796 1.47686 1.57793 2.35650 2.41171 2.54188 3.34220 3.70163 3.95974 4.21374 4.40033 4.57219 4.67049 4.80195 4.91643 4.96259 5.15496 5.27869 5.42682 5.55359 5.66039 5.77661 5.95841 6.34525 6.78801 7.15141 7.29758 7.85467 8.31399 9.20788 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044724 B = 0.011635 C = 0.011051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.905209 B = 2406.057721 C = 2533.132228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.234 3.766 3 H 0.073 0.927 4 C -0.018 4.018 5 C -0.057 4.057 6 N -0.544 5.544 7 C 0.177 3.823 8 N -0.558 5.558 9 H 0.432 0.568 10 N -0.596 5.596 11 C 0.175 3.825 12 C -0.267 4.267 13 H 0.076 0.924 14 C -0.051 4.051 15 N -0.934 5.934 16 Si 0.970 3.030 17 H -0.262 1.262 18 H -0.297 1.297 19 H -0.291 1.291 20 H 0.061 0.939 21 H 0.048 0.952 22 H 0.074 0.926 23 H 0.145 0.855 24 H 0.248 0.752 25 H 0.009 0.991 26 H 0.032 0.968 27 H 0.014 0.986 28 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 6.862 8.458 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.125 3.875 3 H 0.092 0.908 4 C -0.137 4.137 5 C -0.203 4.203 6 N -0.264 5.264 7 C -0.107 4.107 8 N -0.164 5.164 9 H 0.273 0.727 10 N -0.318 5.318 11 C 0.030 3.970 12 C -0.397 4.397 13 H 0.094 0.906 14 C -0.246 4.246 15 N -0.580 5.580 16 Si 0.798 3.202 17 H -0.186 1.186 18 H -0.224 1.224 19 H -0.218 1.218 20 H 0.080 0.920 21 H 0.067 0.933 22 H 0.093 0.907 23 H 0.163 0.837 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.697 5.935 8.649 11.493 hybrid contribution 0.767 0.921 -1.104 1.630 sum -3.930 6.856 7.544 10.926 Atomic orbital electron populations 1.22052 0.94075 1.01803 1.02019 1.19036 0.93788 0.94124 0.80566 0.90840 1.22778 1.06262 0.94745 0.89910 1.22182 1.07895 0.95336 0.94860 1.70145 1.20517 1.28779 1.06987 1.25663 1.03519 0.82151 0.99408 1.43223 1.50773 1.11255 1.11185 0.72712 1.44108 1.50876 1.14751 1.22056 1.20639 0.93859 0.85520 0.96945 1.19635 1.12281 0.91443 1.16338 0.90616 1.25921 0.99116 0.96449 1.03154 1.70251 1.40451 1.06221 1.41106 0.85168 0.77749 0.78570 0.78724 1.18610 1.22393 1.21781 0.91990 0.93318 0.90746 0.83720 0.73567 0.97278 0.94961 0.96714 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.05 71.98 0.65 -3.81 15 2 C 0.23 9.13 3.26 44.25 0.14 9.28 15 3 H 0.07 2.72 7.87 -2.39 -0.02 2.70 15 4 C -0.02 -0.70 6.28 40.95 0.26 -0.44 15 5 C -0.06 -2.53 10.86 83.52 0.91 -1.62 15 6 N -0.54 -22.10 11.25 -200.31 -2.25 -24.36 15 7 C 0.18 5.23 13.04 180.26 2.35 7.58 15 8 N -0.56 -16.12 6.15 -186.49 -1.15 -17.27 15 9 H 0.43 8.59 8.96 -92.71 -0.83 7.76 15 10 N -0.60 -29.44 2.75 -707.00 -1.95 -31.39 15 11 C 0.18 8.78 6.92 127.77 0.88 9.66 15 12 C -0.27 -14.44 9.58 84.03 0.81 -13.64 15 13 H 0.08 3.90 7.81 -2.91 -0.02 3.88 15 14 C -0.05 -2.85 5.17 84.86 0.44 -2.41 15 15 N -0.93 -56.23 10.65 21.65 0.23 -56.00 15 16 Si 0.97 45.07 29.56 68.60 2.03 47.10 15 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 15 18 H -0.30 -13.99 7.11 99.48 0.71 -13.28 15 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 15 20 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 21 H 0.05 1.62 6.47 -2.39 -0.02 1.60 15 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.15 7.05 5.18 -2.91 -0.02 7.04 15 24 H 0.25 4.39 8.06 -2.91 -0.02 4.37 15 25 H 0.01 0.51 5.75 -2.39 -0.01 0.50 15 26 H 0.03 1.40 6.12 -2.39 -0.01 1.39 15 27 H 0.01 0.78 7.40 -2.39 -0.02 0.76 15 28 H 0.25 14.49 8.31 -92.71 -0.77 13.71 15 Total: -1.00 -70.24 234.06 3.69 -66.56 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.34 Total: 10.76 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 6.44 Total: 4.60 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -5.12 Total: -129.01 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -70.24 3.69 -66.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817998.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.864 kcal (2) G-P(sol) polarization free energy of solvation -70.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds