Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99606 * 2 1 4 4 H 1.48499 * 109.46999 * 239.99535 * 3 2 1 5 5 H 1.48497 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47012 * 119.99794 * 3 2 1 7 7 C 1.37872 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.21343 * 59.43814 * 9 7 2 11 11 C 1.52820 * 109.25000 * 300.00158 * 9 7 2 12 12 C 1.53638 * 110.64680 * 185.84332 * 11 9 7 13 13 N 1.45533 * 107.85825 * 57.13016 * 12 11 9 14 14 C 1.46336 * 117.21602 * 174.44684 * 13 12 11 15 15 C 1.54805 * 105.95864 * 151.93657 * 14 13 12 16 16 C 1.55323 * 104.99343 * 356.35236 * 15 14 13 17 17 C 1.48659 * 109.71355 * 294.67690 * 13 12 11 18 18 H 1.09003 * 111.11105 * 308.08832 * 17 13 12 19 19 C 1.52361 * 107.34509 * 69.54648 * 17 13 12 20 20 H 0.97000 * 120.00576 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.24009 * 65.54738 * 11 9 7 22 22 H 1.08995 * 109.21237 * 306.12449 * 11 9 7 23 23 H 1.09006 * 109.78522 * 297.54172 * 12 11 9 24 24 H 1.08996 * 109.83189 * 176.74882 * 12 11 9 25 25 H 1.09003 * 110.15640 * 271.05200 * 14 13 12 26 26 H 1.09000 * 110.16048 * 32.81092 * 14 13 12 27 27 H 1.09002 * 110.33658 * 115.23619 * 15 14 13 28 28 H 1.09002 * 110.33360 * 237.47421 * 15 14 13 29 29 H 1.09002 * 110.90866 * 219.60688 * 16 15 14 30 30 H 1.09000 * 110.90800 * 96.00216 * 16 15 14 31 31 H 1.09003 * 109.83713 * 177.64642 * 19 17 13 32 32 H 1.08997 * 109.88535 * 56.72283 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6182 -2.5486 -0.8843 11 6 0.3750 -2.5739 1.2515 12 6 -0.2969 -3.9513 1.3605 13 7 0.7520 -4.9601 1.3676 14 6 0.3444 -6.3477 1.5909 15 6 1.3987 -7.2223 0.8699 16 6 2.3454 -6.2120 0.1659 17 6 1.4577 -4.9591 0.0592 18 1 0.7518 -5.0379 -0.7677 19 6 2.2538 -3.6628 -0.0264 20 1 -0.4851 0.8400 -0.0004 21 1 -0.3935 -1.8027 1.1982 22 1 0.9929 -2.4049 2.1334 23 1 -0.9551 -4.1094 0.5060 24 1 -0.8718 -4.0102 2.2846 25 1 0.3382 -6.5703 2.6580 26 1 -0.6435 -6.5224 1.1646 27 1 1.9532 -7.8205 1.5930 28 1 0.9173 -7.8664 0.1340 29 1 2.6319 -6.5712 -0.8225 30 1 3.2262 -6.0138 0.7767 31 1 2.8224 -3.6387 -0.9561 32 1 2.9318 -3.5873 0.8237 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -9.989679 kcal Electronic energy + Delta-G solvation = -12831.069583 eV Core-core repulsion = 10790.598481 eV Total energy + Delta-G solvation = -2040.471102 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14831 -34.74211 -32.15774 -31.26805 -28.35777 -26.93572 -24.37939 -21.78461 -20.59513 -20.22893 -18.69229 -16.18601 -15.23255 -14.87269 -14.55835 -14.21320 -13.13353 -12.73574 -12.58502 -12.12901 -11.93650 -11.52601 -11.16994 -10.95722 -10.85441 -10.56136 -10.46392 -10.29058 -10.06880 -9.89741 -9.29682 -8.91098 -8.67459 -8.24437 -7.63840 -5.92670 -3.97761 3.35886 3.40128 3.43156 4.48527 4.60120 5.01475 5.15114 5.29922 5.37465 5.67282 5.82658 6.00744 6.01243 6.04574 6.13703 6.18317 6.35649 6.46854 6.53410 6.62259 6.70642 6.95675 7.11682 7.25174 7.51695 7.68645 7.77379 7.99294 8.12226 8.21848 8.53644 9.05952 9.66190 11.13529 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071161 B = 0.009740 C = 0.008932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.378198 B = 2874.189637 C = 3134.083329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.019 0.981 11 C -0.100 4.100 12 C 0.060 3.940 13 N -0.535 5.535 14 C 0.047 3.953 15 C -0.127 4.127 16 C -0.117 4.117 17 C 0.068 3.932 18 H 0.044 0.956 19 C -0.094 4.094 20 H 0.259 0.741 21 H 0.090 0.910 22 H 0.043 0.957 23 H 0.020 0.980 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -10.260 1.279 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.037 0.963 11 C -0.139 4.139 12 C -0.068 4.068 13 N -0.260 5.260 14 C -0.081 4.081 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.039 4.039 18 H 0.062 0.938 19 C -0.131 4.131 20 H 0.069 0.931 21 H 0.109 0.891 22 H 0.062 0.938 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.116 -9.973 1.701 10.179 hybrid contribution -0.270 0.682 -0.560 0.923 sum 0.846 -9.291 1.141 9.399 Atomic orbital electron populations 1.69870 1.05862 1.26355 1.51185 1.24976 0.94846 0.98995 0.95274 0.86691 0.79610 0.83326 0.78547 1.20394 1.21397 1.20328 1.21195 0.92866 0.90684 1.50029 0.92782 1.18702 0.92638 0.91810 0.93935 0.96324 1.21682 1.00442 0.92309 0.99434 1.22172 0.92171 0.94028 0.98427 1.62828 1.28470 1.03444 1.31281 1.22484 0.96223 0.89448 0.99951 1.22615 0.97179 0.97619 0.99105 1.22392 0.98259 0.95055 0.99765 1.22649 0.95418 0.95891 0.89981 0.93794 1.21594 0.98387 0.93111 1.00055 0.93088 0.89131 0.93812 0.96190 0.92772 0.91350 0.95292 0.91623 0.92169 0.91806 0.90846 0.93370 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 11.36 55.43 0.63 -25.21 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -14.26 8.54 -34.44 -0.29 -14.55 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.22 2.14 -91.53 -0.20 1.02 16 10 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 11 C -0.10 -2.45 5.04 -26.49 -0.13 -2.59 16 12 C 0.06 1.23 5.85 -4.23 -0.02 1.21 16 13 N -0.53 -10.20 4.65 -225.05 -1.05 -11.25 16 14 C 0.05 0.73 6.86 -3.18 -0.02 0.71 16 15 C -0.13 -1.71 6.98 -24.55 -0.17 -1.88 16 16 C -0.12 -1.76 6.61 -25.02 -0.17 -1.93 16 17 C 0.07 1.29 2.63 -66.58 -0.18 1.11 16 18 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 19 C -0.09 -2.03 4.89 -26.73 -0.13 -2.16 16 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 21 H 0.09 2.43 6.20 -51.93 -0.32 2.11 16 22 H 0.04 1.10 8.13 -51.93 -0.42 0.68 16 23 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.44 8.04 -51.93 -0.42 0.02 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 249.45 15.07 3.76 3.76 Total: -1.00 -28.53 249.45 -8.43 -36.95 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.34 Total: -3.37 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.41 Total: -17.47 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.42 Total: -36.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.53 -8.43 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.964 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds