Wall clock time and date at job start Mon Mar 30 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99606 * 2 1 4 4 H 1.48499 * 109.46999 * 239.99535 * 3 2 1 5 5 H 1.48497 * 109.47286 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47012 * 119.99794 * 3 2 1 7 7 C 1.37872 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.21343 * 59.43814 * 9 7 2 11 11 C 1.52820 * 109.25000 * 300.00158 * 9 7 2 12 12 C 1.53638 * 110.64680 * 185.84332 * 11 9 7 13 13 N 1.45533 * 107.85825 * 57.13016 * 12 11 9 14 14 C 1.46336 * 117.21602 * 174.44684 * 13 12 11 15 15 C 1.54805 * 105.95864 * 151.93657 * 14 13 12 16 16 C 1.55323 * 104.99343 * 356.35236 * 15 14 13 17 17 C 1.48659 * 109.71355 * 294.67690 * 13 12 11 18 18 H 1.09003 * 111.11105 * 308.08832 * 17 13 12 19 19 C 1.52361 * 107.34509 * 69.54648 * 17 13 12 20 20 H 0.97000 * 120.00576 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.24009 * 65.54738 * 11 9 7 22 22 H 1.08995 * 109.21237 * 306.12449 * 11 9 7 23 23 H 1.09006 * 109.78522 * 297.54172 * 12 11 9 24 24 H 1.08996 * 109.83189 * 176.74882 * 12 11 9 25 25 H 1.09003 * 110.15640 * 271.05200 * 14 13 12 26 26 H 1.09000 * 110.16048 * 32.81092 * 14 13 12 27 27 H 1.09002 * 110.33658 * 115.23619 * 15 14 13 28 28 H 1.09002 * 110.33360 * 237.47421 * 15 14 13 29 29 H 1.09002 * 110.90866 * 219.60688 * 16 15 14 30 30 H 1.09000 * 110.90800 * 96.00216 * 16 15 14 31 31 H 1.09003 * 109.83713 * 177.64642 * 19 17 13 32 32 H 1.08997 * 109.88535 * 56.72283 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 1 0.6182 -2.5486 -0.8843 11 6 0.3750 -2.5739 1.2515 12 6 -0.2969 -3.9513 1.3605 13 7 0.7520 -4.9601 1.3676 14 6 0.3444 -6.3477 1.5909 15 6 1.3987 -7.2223 0.8699 16 6 2.3454 -6.2120 0.1659 17 6 1.4577 -4.9591 0.0592 18 1 0.7518 -5.0379 -0.7677 19 6 2.2538 -3.6628 -0.0264 20 1 -0.4851 0.8400 -0.0004 21 1 -0.3935 -1.8027 1.1982 22 1 0.9929 -2.4049 2.1334 23 1 -0.9551 -4.1094 0.5060 24 1 -0.8718 -4.0102 2.2846 25 1 0.3382 -6.5703 2.6580 26 1 -0.6435 -6.5224 1.1646 27 1 1.9532 -7.8205 1.5930 28 1 0.9173 -7.8664 0.1340 29 1 2.6319 -6.5712 -0.8225 30 1 3.2262 -6.0138 0.7767 31 1 2.8224 -3.6387 -0.9561 32 1 2.9318 -3.5873 0.8237 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259839280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:57 Heat of formation + Delta-G solvation = -27.394201 kcal Electronic energy + Delta-G solvation = -12831.824300 eV Core-core repulsion = 10790.598481 eV Total energy + Delta-G solvation = -2041.225819 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.65264 -36.53674 -33.97709 -32.97063 -29.96130 -28.58039 -26.25667 -23.52434 -22.09820 -21.60717 -20.46424 -18.30454 -16.68424 -16.53097 -16.28643 -15.70708 -14.87167 -14.56583 -14.22064 -13.73338 -13.46128 -13.08855 -12.88026 -12.80417 -12.34226 -12.21215 -12.18782 -11.88132 -11.77198 -11.38810 -11.26989 -10.75974 -10.67631 -10.37744 -9.14407 -8.07820 -6.21569 1.41104 1.42890 1.50463 2.43822 3.15677 3.19186 3.76872 3.90556 4.15027 4.27289 4.41126 4.49488 4.58535 4.64789 4.78815 4.81668 4.93707 4.99167 5.04802 5.07927 5.26244 5.28717 5.34842 5.40682 5.58253 5.63532 5.98526 6.04582 6.27407 6.39720 6.50027 6.90126 7.46018 8.96659 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071161 B = 0.009740 C = 0.008932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.378198 B = 2874.189637 C = 3134.083329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.044 3.956 10 H -0.015 1.015 11 C -0.091 4.091 12 C 0.071 3.929 13 N -0.547 5.547 14 C 0.042 3.958 15 C -0.117 4.117 16 C -0.110 4.110 17 C 0.066 3.934 18 H 0.034 0.966 19 C -0.085 4.085 20 H 0.260 0.740 21 H 0.060 0.940 22 H 0.027 0.973 23 H 0.014 0.986 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -11.720 1.591 11.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.572 4.572 8 H 0.070 0.930 9 C 0.025 3.975 10 H 0.003 0.997 11 C -0.129 4.129 12 C -0.057 4.057 13 N -0.273 5.273 14 C -0.085 4.085 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.041 4.041 18 H 0.052 0.948 19 C -0.123 4.123 20 H 0.069 0.931 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.911 -11.454 2.014 11.785 hybrid contribution -0.533 1.145 -0.661 1.425 sum 1.378 -10.309 1.352 10.488 Atomic orbital electron populations 1.70016 1.07195 1.27134 1.51556 1.25779 0.95724 1.02467 0.94839 0.85662 0.78424 0.79055 0.78823 1.19611 1.20875 1.19702 1.21576 0.93026 0.92232 1.50383 0.93025 1.18695 0.93094 0.92863 0.92844 0.99721 1.21440 0.99242 0.94174 0.98087 1.21913 0.92258 0.92591 0.98974 1.62769 1.27985 1.05225 1.31307 1.22648 0.97306 0.87312 1.01263 1.22613 0.96209 0.97025 0.99684 1.22370 0.97789 0.93366 1.01318 1.22612 0.95656 0.96128 0.89738 0.94752 1.21428 0.97556 0.93436 0.99844 0.93076 0.92172 0.95394 0.96825 0.91129 0.90018 0.94783 0.89372 0.90237 0.89770 0.90857 0.93061 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.60 11.36 21.45 0.24 -54.36 16 2 C 0.01 0.58 5.30 84.65 0.45 1.03 16 3 Si 0.95 44.72 29.54 68.60 2.03 46.74 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.53 -30.63 8.54 25.60 0.22 -30.41 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.04 2.30 2.14 -11.39 -0.02 2.28 16 10 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C -0.09 -4.59 5.04 30.75 0.15 -4.43 16 12 C 0.07 2.92 5.85 86.78 0.51 3.43 16 13 N -0.55 -20.10 4.65 -865.93 -4.03 -24.13 16 14 C 0.04 1.18 6.86 87.03 0.60 1.78 16 15 C -0.12 -2.66 6.98 32.01 0.22 -2.44 16 16 C -0.11 -3.00 6.61 31.70 0.21 -2.79 16 17 C 0.07 2.42 2.63 44.68 0.12 2.54 16 18 H 0.03 1.32 8.05 -2.39 -0.02 1.30 16 19 C -0.08 -3.69 4.89 30.60 0.15 -3.54 16 20 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 21 H 0.06 3.37 6.20 -2.39 -0.01 3.36 16 22 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 23 H 0.01 0.57 8.04 -2.38 -0.02 0.55 16 24 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.03 0.93 8.04 -2.39 -0.02 0.91 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 31 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -62.12 249.45 1.91 -60.21 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.06 Total: 4.09 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 2.60 Total: -32.56 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.78 Total: -78.48 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.12 1.91 -60.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.819 kcal (2) G-P(sol) polarization free energy of solvation -62.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds