Wall clock time and date at job start Mon Mar 30 2020 02:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99915 * 2 1 4 4 H 1.48500 * 109.47231 * 240.00159 * 3 2 1 5 5 H 1.48498 * 109.47361 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46958 * 120.00419 * 3 2 1 7 7 C 1.37872 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00372 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.24828 * 300.55195 * 9 7 2 11 11 C 1.52824 * 109.24743 * 60.00524 * 9 7 2 12 12 C 1.53636 * 110.65048 * 174.16368 * 11 9 7 13 13 N 1.45534 * 107.86104 * 302.86913 * 12 11 9 14 14 C 1.46581 * 117.17758 * 185.50979 * 13 12 11 15 15 C 1.54801 * 105.84342 * 208.02309 * 14 13 12 16 16 C 1.55334 * 105.08025 * 3.71487 * 15 14 13 17 17 C 1.48657 * 109.71482 * 65.31263 * 13 12 11 18 18 H 1.08995 * 111.11173 * 52.54452 * 17 13 12 19 19 C 1.52369 * 107.34876 * 290.46484 * 17 13 12 20 20 H 0.96997 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.24165 * 53.85665 * 11 9 7 22 22 H 1.09000 * 109.21049 * 294.44299 * 11 9 7 23 23 H 1.08991 * 109.78830 * 183.27675 * 12 11 9 24 24 H 1.09004 * 109.83024 * 62.47948 * 12 11 9 25 25 H 1.09000 * 110.19142 * 88.94627 * 14 13 12 26 26 H 1.09000 * 110.22841 * 327.11979 * 14 13 12 27 27 H 1.09002 * 110.33686 * 244.78298 * 15 14 13 28 28 H 1.08996 * 110.33794 * 122.64614 * 15 14 13 29 29 H 1.08999 * 110.90685 * 140.34641 * 16 15 14 30 30 H 1.09004 * 110.90387 * 263.91571 * 16 15 14 31 31 H 1.09001 * 109.82970 * 182.35379 * 19 17 13 32 32 H 1.08998 * 109.83176 * 303.30117 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6187 -2.5490 0.8859 11 6 0.3741 -2.5746 -1.2498 12 6 -0.2980 -3.9519 -1.3576 13 7 0.7507 -4.9609 -1.3649 14 6 0.3410 -6.3507 -1.5868 15 6 1.3976 -7.2230 -0.8663 16 6 2.3450 -6.2122 -0.1637 17 6 1.4574 -4.9592 -0.0571 18 1 0.7531 -5.0487 0.7699 19 6 2.2537 -3.6629 0.0273 20 1 -0.4850 0.8400 0.0004 21 1 0.9909 -2.4057 -2.1324 22 1 -0.3942 -1.8033 -1.1957 23 1 -0.8728 -4.0106 -2.2818 24 1 -0.9561 -4.1101 -0.5032 25 1 0.3331 -6.5749 -2.6535 26 1 -0.6458 -6.5257 -1.1584 27 1 1.9515 -7.8217 -1.5894 28 1 0.9182 -7.8677 -0.1297 29 1 2.6323 -6.5707 0.8247 30 1 3.2257 -6.0149 -0.7751 31 1 2.8230 -3.6385 0.9565 32 1 2.9304 -3.5885 -0.8239 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:01 Heat of formation + Delta-G solvation = -9.993566 kcal Electronic energy + Delta-G solvation = -12830.049126 eV Core-core repulsion = 10789.577855 eV Total energy + Delta-G solvation = -2040.471271 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13537 -34.73876 -32.15711 -31.26162 -28.35838 -26.93120 -24.38177 -21.78286 -20.59945 -20.22321 -18.69144 -16.18619 -15.22992 -14.86979 -14.55780 -14.21026 -13.13046 -12.73520 -12.58622 -12.12776 -11.93459 -11.52671 -11.17097 -10.95886 -10.85491 -10.55838 -10.46348 -10.29039 -10.07156 -9.89645 -9.29774 -8.91005 -8.67373 -8.24460 -7.64212 -5.92686 -3.97753 3.35901 3.40139 3.43171 4.48530 4.59754 5.01796 5.14955 5.29871 5.37483 5.67164 5.82721 6.00459 6.01252 6.05106 6.13639 6.18341 6.35455 6.46543 6.53493 6.62216 6.70732 6.95496 7.11621 7.25161 7.51528 7.68588 7.77181 7.98891 8.12165 8.21905 8.53669 9.05932 9.66201 11.13529 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.071160 B = 0.009738 C = 0.008930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.382504 B = 2874.730949 C = 3134.841374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.019 0.981 11 C -0.100 4.100 12 C 0.059 3.941 13 N -0.534 5.534 14 C 0.047 3.953 15 C -0.127 4.127 16 C -0.117 4.117 17 C 0.069 3.931 18 H 0.044 0.956 19 C -0.093 4.093 20 H 0.259 0.741 21 H 0.043 0.957 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.020 0.980 25 H 0.068 0.932 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -10.250 -1.274 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.037 0.963 11 C -0.139 4.139 12 C -0.068 4.068 13 N -0.260 5.260 14 C -0.082 4.082 15 C -0.165 4.165 16 C -0.155 4.155 17 C -0.039 4.039 18 H 0.062 0.938 19 C -0.131 4.131 20 H 0.069 0.931 21 H 0.062 0.938 22 H 0.109 0.891 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.087 0.913 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.113 -9.964 -1.697 10.168 hybrid contribution -0.270 0.674 0.563 0.919 sum 0.842 -9.290 -1.134 9.397 Atomic orbital electron populations 1.69869 1.05867 1.26353 1.51178 1.24974 0.94847 0.98998 0.95273 0.86689 0.79609 0.83321 0.78546 1.20326 1.21398 1.20396 1.21195 0.92865 0.90681 1.50036 0.92782 1.18701 0.92633 0.91805 0.93937 0.96329 1.21684 1.00450 0.92309 0.99431 1.22171 0.92191 0.94032 0.98425 1.62917 1.28370 1.03382 1.31320 1.22530 0.96213 0.89450 0.99957 1.22611 0.97175 0.97620 0.99115 1.22404 0.98269 0.95096 0.99762 1.22645 0.95392 0.95884 0.89986 0.93835 1.21585 0.98372 0.93072 1.00061 0.93088 0.93808 0.89126 0.92776 0.96191 0.91324 0.95248 0.91641 0.92190 0.91815 0.90865 0.93359 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 11.36 55.43 0.63 -25.20 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.25 8.54 -34.44 -0.29 -14.55 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.05 1.22 2.15 -91.53 -0.20 1.02 16 10 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 11 C -0.10 -2.46 5.04 -26.49 -0.13 -2.59 16 12 C 0.06 1.23 5.85 -4.23 -0.02 1.20 16 13 N -0.53 -10.20 4.66 -224.86 -1.05 -11.24 16 14 C 0.05 0.73 6.87 -3.05 -0.02 0.70 16 15 C -0.13 -1.71 6.98 -24.54 -0.17 -1.88 16 16 C -0.12 -1.77 6.61 -25.01 -0.17 -1.94 16 17 C 0.07 1.29 2.63 -66.58 -0.18 1.12 16 18 H 0.04 0.85 8.06 -51.93 -0.42 0.43 16 19 C -0.09 -2.02 4.89 -26.72 -0.13 -2.15 16 20 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 21 H 0.04 1.11 8.13 -51.93 -0.42 0.68 16 22 H 0.09 2.44 6.19 -51.93 -0.32 2.11 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.03 0.44 8.05 -51.93 -0.42 0.03 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 249.49 15.07 3.76 3.76 Total: -1.00 -28.52 249.49 -8.43 -36.94 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.34 Total: -3.36 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.41 Total: -17.47 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.42 Total: -36.45 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.52 -8.43 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.950 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds