Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00232 * 2 1 4 4 H 1.48504 * 109.46883 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47341 * 119.99682 * 3 2 1 6 6 H 1.48494 * 109.47002 * 239.99912 * 3 2 1 7 7 C 1.37881 * 120.00073 * 180.26766 * 2 1 3 8 8 H 1.07997 * 119.99835 * 341.81054 * 7 2 1 9 9 C 1.50698 * 120.00063 * 161.79873 * 7 2 1 10 10 H 1.08999 * 109.24651 * 55.00026 * 9 7 2 11 11 C 1.52832 * 109.25174 * 295.58151 * 9 7 2 12 12 C 1.53636 * 110.64461 * 293.58044 * 11 9 7 13 13 N 1.45533 * 107.86488 * 302.86226 * 12 11 9 14 14 C 1.46336 * 117.22142 * 185.53964 * 13 12 11 15 15 C 1.54797 * 105.96288 * 208.07017 * 14 13 12 16 16 C 1.55334 * 104.99318 * 3.64640 * 15 14 13 17 17 C 1.48663 * 109.70921 * 65.31541 * 13 12 11 18 18 H 1.09003 * 111.10834 * 51.91483 * 17 13 12 19 19 C 1.52362 * 107.35129 * 290.46335 * 17 13 12 20 20 H 0.97001 * 120.00244 * 174.66908 * 1 2 3 21 21 H 1.09002 * 109.24015 * 53.87962 * 11 9 7 22 22 H 1.09000 * 109.24061 * 173.27897 * 11 9 7 23 23 H 1.09007 * 109.77946 * 183.27328 * 12 11 9 24 24 H 1.08995 * 109.78354 * 62.46208 * 12 11 9 25 25 H 1.09001 * 110.15255 * 327.19674 * 14 13 12 26 26 H 1.09000 * 110.14984 * 88.87437 * 14 13 12 27 27 H 1.09004 * 110.33784 * 122.51913 * 15 14 13 28 28 H 1.08995 * 110.33704 * 244.76792 * 15 14 13 29 29 H 1.08990 * 110.90831 * 264.00327 * 16 15 14 30 30 H 1.08996 * 110.91159 * 140.39073 * 16 15 14 31 31 H 1.08999 * 109.83291 * 303.30895 * 19 17 13 32 32 H 1.09001 * 109.89321 * 182.38456 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0056 8 1 1.5050 -2.1073 0.2821 9 6 3.4549 -1.2248 -0.4134 10 1 4.0160 -0.5209 0.2013 11 6 3.5744 -0.8169 -1.8814 12 6 2.9179 -1.8671 -2.7906 13 7 3.5561 -3.1480 -2.5262 14 6 3.1703 -4.2760 -3.3749 15 6 3.3715 -5.5458 -2.5128 16 6 3.8002 -5.0192 -1.1157 17 6 3.2592 -3.5784 -1.1345 18 1 2.1879 -3.5505 -0.9351 19 6 4.0116 -2.6406 -0.1986 20 1 -0.4850 -0.8364 -0.0780 21 1 3.0814 0.1441 -2.0284 22 1 4.6282 -0.7231 -2.1435 23 1 3.0617 -1.5920 -3.8355 24 1 1.8528 -1.9328 -2.5690 25 1 2.1249 -4.1838 -3.6696 26 1 3.8071 -4.3159 -4.2587 27 1 2.4383 -6.1041 -2.4371 28 1 4.1553 -6.1723 -2.9383 29 1 4.8853 -5.0260 -1.0137 30 1 3.3325 -5.6000 -0.3207 31 1 5.0758 -2.6591 -0.4336 32 1 3.8561 -2.9460 0.8361 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = -7.258771 kcal Electronic energy + Delta-G solvation = -13109.250430 eV Core-core repulsion = 11068.897749 eV Total energy + Delta-G solvation = -2040.352681 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.23445 -34.92383 -32.12864 -31.37560 -28.64796 -26.81218 -24.13689 -21.99318 -20.60046 -20.28526 -18.73703 -16.80966 -15.21765 -15.09752 -14.24643 -13.86540 -13.56830 -13.06636 -12.57800 -12.21523 -11.89821 -11.63560 -11.31274 -11.15007 -10.86216 -10.51371 -10.27734 -10.18721 -10.04986 -9.67762 -9.36785 -9.15331 -8.70078 -8.22739 -7.56347 -6.37002 -3.98368 3.42936 3.47355 3.65435 4.55553 4.63095 5.03354 5.17749 5.31930 5.33721 5.73952 5.85681 5.96675 6.01456 6.11372 6.13759 6.19660 6.30294 6.37681 6.49820 6.55945 6.62426 6.79332 6.92159 7.04466 7.14352 7.31140 7.38839 7.77386 7.99794 8.26341 8.43167 8.95838 9.67449 10.99232 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.053982 B = 0.012168 C = 0.012029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.562907 B = 2300.659127 C = 2327.115831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 1.041 2.959 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.592 4.592 8 H 0.054 0.946 9 C 0.013 3.987 10 H 0.020 0.980 11 C -0.111 4.111 12 C 0.075 3.925 13 N -0.539 5.539 14 C 0.049 3.951 15 C -0.126 4.126 16 C -0.119 4.119 17 C 0.078 3.922 18 H 0.063 0.937 19 C -0.084 4.084 20 H 0.265 0.735 21 H 0.061 0.939 22 H 0.036 0.964 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.031 0.969 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -6.775 -4.520 10.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.173 4.173 3 Si 0.870 3.130 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.630 4.630 8 H 0.072 0.928 9 C -0.006 4.006 10 H 0.038 0.962 11 C -0.149 4.149 12 C -0.052 4.052 13 N -0.265 5.265 14 C -0.079 4.079 15 C -0.164 4.164 16 C -0.157 4.157 17 C -0.029 4.029 18 H 0.081 0.919 19 C -0.122 4.122 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.353 -5.008 -4.562 9.998 hybrid contribution -0.789 -1.793 -0.084 1.961 sum 6.564 -6.801 -4.646 10.532 Atomic orbital electron populations 1.70848 1.07217 1.30195 1.46170 1.25722 0.96054 1.02367 0.93195 0.84134 0.75443 0.76231 0.77230 1.21511 1.21156 1.20024 1.22014 0.95035 0.96101 1.49818 0.92772 1.19075 0.97333 0.92444 0.91767 0.96242 1.21992 0.97673 0.97504 0.97723 1.21766 0.97188 0.88712 0.97568 1.62815 1.58417 1.02089 1.03144 1.22434 0.98223 0.90811 0.96437 1.22598 1.00728 0.96964 0.96136 1.22416 1.00985 0.96467 0.95868 1.22510 0.99045 0.92360 0.89023 0.91942 1.21340 0.97335 0.96525 0.97015 0.92503 0.92060 0.94545 0.93206 0.93897 0.95096 0.91466 0.92096 0.91719 0.91224 0.91856 0.93567 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.70 55.43 0.76 -27.17 16 2 C 0.03 0.89 5.28 -17.82 -0.09 0.79 16 3 Si 1.04 25.35 26.27 -169.99 -4.47 20.89 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.17 5.69 56.52 0.32 -5.85 16 7 C -0.59 -16.36 7.34 -34.44 -0.25 -16.61 16 8 H 0.05 1.62 6.98 -52.49 -0.37 1.25 16 9 C 0.01 0.31 2.15 -91.53 -0.20 0.11 16 10 H 0.02 0.47 6.81 -51.93 -0.35 0.12 16 11 C -0.11 -2.49 5.18 -26.49 -0.14 -2.63 16 12 C 0.08 1.60 5.64 -4.23 -0.02 1.57 16 13 N -0.54 -10.48 4.65 -225.06 -1.05 -11.53 16 14 C 0.05 0.80 6.86 -3.18 -0.02 0.78 16 15 C -0.13 -1.80 6.98 -24.55 -0.17 -1.97 16 16 C -0.12 -1.90 6.61 -25.01 -0.17 -2.06 16 17 C 0.08 1.55 2.43 -66.58 -0.16 1.39 16 18 H 0.06 1.43 6.56 -51.93 -0.34 1.09 16 19 C -0.08 -1.77 5.13 -26.72 -0.14 -1.91 16 20 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 21 H 0.06 1.44 4.69 -51.93 -0.24 1.20 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 25 H 0.03 0.51 8.04 -51.93 -0.42 0.10 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 240.67 15.07 3.63 3.63 Total: -1.00 -29.26 240.67 -7.63 -36.90 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -5.15 Total: -2.18 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.36 Total: -20.54 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.29 Total: -38.69 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -4.47 Total: 20.89 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.26 -7.63 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.639 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds