Wall clock time and date at job start Mon Mar 30 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86808 * 120.00232 * 2 1 4 4 H 1.48504 * 109.46883 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47341 * 119.99682 * 3 2 1 6 6 H 1.48494 * 109.47002 * 239.99912 * 3 2 1 7 7 C 1.37881 * 120.00073 * 180.26766 * 2 1 3 8 8 H 1.07997 * 119.99835 * 341.81054 * 7 2 1 9 9 C 1.50698 * 120.00063 * 161.79873 * 7 2 1 10 10 H 1.08999 * 109.24651 * 55.00026 * 9 7 2 11 11 C 1.52832 * 109.25174 * 295.58151 * 9 7 2 12 12 C 1.53636 * 110.64461 * 293.58044 * 11 9 7 13 13 N 1.45533 * 107.86488 * 302.86226 * 12 11 9 14 14 C 1.46336 * 117.22142 * 185.53964 * 13 12 11 15 15 C 1.54797 * 105.96288 * 208.07017 * 14 13 12 16 16 C 1.55334 * 104.99318 * 3.64640 * 15 14 13 17 17 C 1.48663 * 109.70921 * 65.31541 * 13 12 11 18 18 H 1.09003 * 111.10834 * 51.91483 * 17 13 12 19 19 C 1.52362 * 107.35129 * 290.46335 * 17 13 12 20 20 H 0.97001 * 120.00244 * 174.66908 * 1 2 3 21 21 H 1.09002 * 109.24015 * 53.87962 * 11 9 7 22 22 H 1.09000 * 109.24061 * 173.27897 * 11 9 7 23 23 H 1.09007 * 109.77946 * 183.27328 * 12 11 9 24 24 H 1.08995 * 109.78354 * 62.46208 * 12 11 9 25 25 H 1.09001 * 110.15255 * 327.19674 * 14 13 12 26 26 H 1.09000 * 110.14984 * 88.87437 * 14 13 12 27 27 H 1.09004 * 110.33784 * 122.51913 * 15 14 13 28 28 H 1.08995 * 110.33704 * 244.76792 * 15 14 13 29 29 H 1.08990 * 110.90831 * 264.00327 * 16 15 14 30 30 H 1.08996 * 110.91159 * 140.39073 * 16 15 14 31 31 H 1.08999 * 109.83291 * 303.30895 * 19 17 13 32 32 H 1.09001 * 109.89321 * 182.38456 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0056 8 1 1.5050 -2.1073 0.2821 9 6 3.4549 -1.2248 -0.4134 10 1 4.0160 -0.5209 0.2013 11 6 3.5744 -0.8169 -1.8814 12 6 2.9179 -1.8671 -2.7906 13 7 3.5561 -3.1480 -2.5262 14 6 3.1703 -4.2760 -3.3749 15 6 3.3715 -5.5458 -2.5128 16 6 3.8002 -5.0192 -1.1157 17 6 3.2592 -3.5784 -1.1345 18 1 2.1879 -3.5505 -0.9351 19 6 4.0116 -2.6406 -0.1986 20 1 -0.4850 -0.8364 -0.0780 21 1 3.0814 0.1441 -2.0284 22 1 4.6282 -0.7231 -2.1435 23 1 3.0617 -1.5920 -3.8355 24 1 1.8528 -1.9328 -2.5690 25 1 2.1249 -4.1838 -3.6696 26 1 3.8071 -4.3159 -4.2587 27 1 2.4383 -6.1041 -2.4371 28 1 4.1553 -6.1723 -2.9383 29 1 4.8853 -5.0260 -1.0137 30 1 3.3325 -5.6000 -0.3207 31 1 5.0758 -2.6591 -0.4336 32 1 3.8561 -2.9460 0.8361 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259839287.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:07 Heat of formation + Delta-G solvation = -26.786942 kcal Electronic energy + Delta-G solvation = -13110.097235 eV Core-core repulsion = 11068.897749 eV Total energy + Delta-G solvation = -2041.199486 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.79283 -36.65581 -34.10926 -33.06316 -30.21220 -28.40994 -26.09902 -23.70362 -22.14149 -21.67556 -20.71154 -18.80603 -16.75620 -16.56891 -15.85199 -15.69910 -15.37013 -14.85638 -14.19792 -13.85417 -13.57643 -13.22624 -13.00727 -12.78298 -12.28271 -12.20784 -11.95184 -11.90852 -11.53499 -11.42954 -11.18689 -10.90635 -10.73122 -10.38711 -9.20228 -8.67056 -6.27890 1.47010 1.53362 1.72942 2.52537 3.07283 3.15391 3.72214 3.84726 4.10586 4.24662 4.34051 4.37580 4.50510 4.58219 4.74664 4.76814 4.86904 4.90265 4.98220 5.04823 5.09261 5.22692 5.27347 5.34763 5.40932 5.45668 5.59108 6.05982 6.15058 6.19915 6.42942 6.63826 7.46251 8.67907 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.053982 B = 0.012168 C = 0.012029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.562907 B = 2300.659127 C = 2327.115831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.022 4.022 3 Si 1.079 2.921 4 H -0.295 1.295 5 H -0.267 1.267 6 H -0.241 1.241 7 C -0.583 4.583 8 H 0.014 0.986 9 C 0.005 3.995 10 H 0.023 0.977 11 C -0.110 4.110 12 C 0.080 3.920 13 N -0.536 5.536 14 C 0.042 3.958 15 C -0.119 4.119 16 C -0.112 4.112 17 C 0.074 3.926 18 H 0.016 0.984 19 C -0.082 4.082 20 H 0.248 0.752 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.000 1.000 25 H 0.020 0.980 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.834 -7.322 -5.575 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.219 4.219 3 Si 0.901 3.099 4 H -0.222 1.222 5 H -0.192 1.192 6 H -0.166 1.166 7 C -0.621 4.621 8 H 0.032 0.968 9 C -0.014 4.014 10 H 0.041 0.959 11 C -0.148 4.148 12 C -0.049 4.049 13 N -0.261 5.261 14 C -0.086 4.086 15 C -0.156 4.156 16 C -0.150 4.150 17 C -0.033 4.033 18 H 0.034 0.966 19 C -0.120 4.120 20 H 0.056 0.944 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.018 0.982 25 H 0.038 0.962 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.138 -5.591 -5.622 12.870 hybrid contribution -1.687 -1.715 0.253 2.419 sum 8.451 -7.305 -5.369 12.394 Atomic orbital electron populations 1.70980 1.08546 1.29121 1.49492 1.27127 0.95978 1.06225 0.92590 0.83664 0.74929 0.71929 0.79352 1.22183 1.19224 1.16556 1.22164 0.97148 0.94351 1.48424 0.96785 1.19146 0.94585 0.94687 0.92946 0.95872 1.21918 0.99149 0.97165 0.96554 1.21650 0.94632 0.89949 0.98632 1.62872 1.57661 1.02285 1.03289 1.22640 0.98172 0.90575 0.97189 1.22609 1.02208 0.96257 0.94574 1.22396 1.01806 0.93439 0.97386 1.22428 0.96449 0.95121 0.89351 0.96558 1.21302 0.98584 0.94912 0.97169 0.94370 0.93318 0.91916 0.90847 0.98196 0.96176 0.89030 0.91441 0.88591 0.89604 0.90998 0.91148 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.45 13.70 21.45 0.29 -60.16 16 2 C -0.02 -1.31 5.28 84.66 0.45 -0.86 16 3 Si 1.08 50.71 26.27 68.60 1.80 52.52 16 4 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.24 -10.03 5.69 99.48 0.57 -9.46 16 7 C -0.58 -33.24 7.34 25.60 0.19 -33.06 16 8 H 0.01 0.88 6.98 -2.91 -0.02 0.86 16 9 C 0.01 0.26 2.15 -11.38 -0.02 0.23 16 10 H 0.02 1.08 6.81 -2.39 -0.02 1.06 16 11 C -0.11 -4.74 5.18 30.75 0.16 -4.58 16 12 C 0.08 3.32 5.64 86.78 0.49 3.80 16 13 N -0.54 -19.81 4.65 -865.95 -4.03 -23.83 16 14 C 0.04 1.26 6.86 87.02 0.60 1.86 16 15 C -0.12 -2.99 6.98 32.01 0.22 -2.76 16 16 C -0.11 -3.27 6.61 31.71 0.21 -3.06 16 17 C 0.07 2.91 2.43 44.67 0.11 3.01 16 18 H 0.02 0.79 6.56 -2.39 -0.02 0.77 16 19 C -0.08 -3.34 5.13 30.60 0.16 -3.18 16 20 H 0.25 16.19 8.73 -92.71 -0.81 15.38 16 21 H 0.05 2.20 4.69 -2.39 -0.01 2.19 16 22 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 24 H 0.00 -0.01 7.50 -2.39 -0.02 -0.03 16 25 H 0.02 0.64 8.04 -2.39 -0.02 0.63 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -65.21 240.67 1.52 -63.69 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.90 Total: 6.38 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 2.55 Total: -38.59 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -3.73 Total: -83.99 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.80 Total: 52.52 kcal Total: -65.21 1.52 -63.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839287.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.904 kcal (2) G-P(sol) polarization free energy of solvation -65.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds