Wall clock time and date at job start Mon Mar 30 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99687 * 2 1 4 4 H 1.48504 * 109.47158 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47007 * 119.99982 * 3 2 1 6 6 H 1.48497 * 109.47345 * 240.00206 * 3 2 1 7 7 C 1.37875 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00028 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.43685 * 25.38171 * 9 7 2 11 11 C 1.54988 * 110.48964 * 147.92977 * 9 7 2 12 12 C 1.55199 * 104.93314 * 116.18087 * 11 9 7 13 13 N 1.47094 * 103.52320 * 336.00564 * 12 11 9 14 14 C 1.45675 * 116.52335 * 162.38143 * 13 12 11 15 15 C 1.53623 * 107.80783 * 177.35603 * 14 13 12 16 16 C 1.52819 * 110.70752 * 57.37588 * 15 14 13 17 17 C 1.53662 * 110.60473 * 306.25686 * 16 15 14 18 18 C 1.48731 * 103.70084 * 42.23173 * 13 12 11 19 19 H 1.08996 * 110.33908 * 73.84163 * 18 13 12 20 20 H 0.97005 * 119.99705 * 179.97438 * 1 2 3 21 21 H 1.08998 * 110.35134 * 235.04631 * 11 9 7 22 22 H 1.08997 * 110.34797 * 357.21313 * 11 9 7 23 23 H 1.08998 * 110.61218 * 94.51503 * 12 11 9 24 24 H 1.09002 * 110.61092 * 217.49542 * 12 11 9 25 25 H 1.08998 * 109.79234 * 296.93903 * 14 13 12 26 26 H 1.09008 * 109.79107 * 57.77817 * 14 13 12 27 27 H 1.09005 * 109.22848 * 177.69154 * 15 14 13 28 28 H 1.08993 * 109.23118 * 297.09702 * 15 14 13 29 29 H 1.08999 * 109.25229 * 66.55177 * 16 15 14 30 30 H 1.09000 * 109.24447 * 185.96679 * 16 15 14 31 31 H 1.09004 * 109.83823 * 175.64372 * 17 16 15 32 32 H 1.09000 * 109.84039 * 296.54128 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6966 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.2615 -2.3673 -0.4380 11 6 2.0452 -3.5839 -0.7719 12 6 2.3895 -4.6599 0.2921 13 7 2.3470 -3.9157 1.5602 14 6 2.2370 -4.7093 2.7768 15 6 2.2767 -3.7449 3.9720 16 6 1.1592 -2.7079 3.8668 17 6 1.2133 -1.9904 2.5091 18 6 1.1416 -3.0552 1.4234 19 1 0.2359 -3.6527 1.5271 20 1 -0.4850 -0.8401 -0.0004 21 1 1.4294 -4.0149 -1.5613 22 1 2.9566 -3.1592 -1.1925 23 1 1.6442 -5.4552 0.2887 24 1 3.3862 -5.0659 0.1187 25 1 1.2950 -5.2577 2.7760 26 1 3.0715 -5.4080 2.8384 27 1 2.1546 -4.3119 4.8950 28 1 3.2393 -3.2340 3.9893 29 1 0.1954 -3.2061 3.9718 30 1 1.2729 -1.9749 4.6655 31 1 0.3669 -1.3099 2.4162 32 1 2.1464 -1.4338 2.4217 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865511.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:45 Heat of formation + Delta-G solvation = -10.186762 kcal Electronic energy + Delta-G solvation = -13167.455332 eV Core-core repulsion = 11126.975684 eV Total energy + Delta-G solvation = -2040.479648 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.12116 -34.49735 -33.08976 -30.56428 -28.42426 -26.65163 -23.76742 -22.29140 -20.84374 -19.83020 -18.93635 -16.39056 -15.29319 -14.32065 -14.22377 -13.73341 -13.64242 -12.95350 -12.70161 -12.51068 -11.76184 -11.64365 -11.23010 -10.71540 -10.53089 -10.43782 -10.32768 -10.04686 -9.89002 -9.58479 -9.41089 -9.34493 -8.34795 -8.25971 -7.59931 -6.24797 -3.90216 3.49787 3.50775 3.69311 4.60199 4.72744 5.33538 5.38260 5.43374 5.53964 5.78940 5.86748 5.94324 6.07859 6.09937 6.14611 6.27910 6.33305 6.45570 6.49725 6.62385 6.72860 6.84046 7.04324 7.08810 7.27951 7.39619 7.58571 7.86892 8.04283 8.40089 8.58819 8.99911 9.77256 11.13780 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.038540 B = 0.014472 C = 0.012157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.344698 B = 1934.282973 C = 2302.691541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.019 3.981 3 Si 1.062 2.938 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.563 4.563 8 H 0.050 0.950 9 C 0.030 3.970 10 H 0.039 0.961 11 C -0.114 4.114 12 C 0.045 3.955 13 N -0.517 5.517 14 C 0.056 3.944 15 C -0.109 4.109 16 C -0.125 4.125 17 C -0.081 4.081 18 C 0.076 3.924 19 H 0.013 0.987 20 H 0.267 0.733 21 H 0.041 0.959 22 H 0.065 0.935 23 H 0.022 0.978 24 H 0.063 0.937 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -6.640 4.556 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.891 3.109 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.602 4.602 8 H 0.068 0.932 9 C 0.011 3.989 10 H 0.057 0.943 11 C -0.152 4.152 12 C -0.083 4.083 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.147 4.147 16 C -0.163 4.163 17 C -0.119 4.119 18 C -0.032 4.032 19 H 0.031 0.969 20 H 0.079 0.921 21 H 0.060 0.940 22 H 0.084 0.916 23 H 0.040 0.960 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.229 -4.724 4.634 7.363 hybrid contribution -0.515 -2.386 0.015 2.441 sum 2.714 -7.110 4.649 8.918 Atomic orbital electron populations 1.70832 1.06810 1.30389 1.47463 1.25722 0.96532 1.02282 0.93893 0.83635 0.74961 0.75768 0.76520 1.21042 1.21469 1.21637 1.21747 0.93990 0.90665 1.53776 0.93163 1.19532 0.96055 0.94090 0.89259 0.94332 1.22703 1.00665 0.95762 0.96095 1.22771 0.98991 0.95309 0.91235 1.63884 1.40312 1.19856 1.00086 1.21968 0.98683 0.95050 0.91623 1.21522 1.00066 0.97042 0.96025 1.21726 0.97353 0.97737 0.99476 1.21248 1.03627 0.96692 0.90293 1.22705 0.87943 0.93096 0.99441 0.96875 0.92114 0.93979 0.91580 0.96028 0.91844 0.96172 0.92024 0.92961 0.91516 0.93714 0.92838 0.91852 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.97 13.64 55.43 0.76 -26.21 16 2 C 0.02 0.53 5.17 -17.82 -0.09 0.43 16 3 Si 1.06 25.12 29.90 -169.99 -5.08 20.04 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.56 -15.37 6.40 -34.44 -0.22 -15.59 16 8 H 0.05 1.42 7.76 -52.49 -0.41 1.01 16 9 C 0.03 0.75 2.88 -90.59 -0.26 0.49 16 10 H 0.04 1.04 6.35 -51.93 -0.33 0.71 16 11 C -0.11 -2.46 6.69 -24.52 -0.16 -2.63 16 12 C 0.05 0.87 6.71 -2.55 -0.02 0.85 16 13 N -0.52 -10.66 4.84 -224.48 -1.09 -11.75 16 14 C 0.06 0.97 5.87 -4.16 -0.02 0.94 16 15 C -0.11 -1.79 6.06 -26.50 -0.16 -1.95 16 16 C -0.13 -2.27 5.95 -26.48 -0.16 -2.43 16 17 C -0.08 -1.81 4.63 -26.77 -0.12 -1.93 16 18 C 0.08 1.72 2.37 -66.95 -0.16 1.56 16 19 H 0.01 0.30 7.98 -51.93 -0.41 -0.11 16 20 H 0.27 7.85 6.50 -40.82 -0.27 7.58 16 21 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.07 1.47 7.69 -51.93 -0.40 1.07 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.02 0.35 7.99 -51.93 -0.41 -0.07 16 26 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.08 2.02 7.15 -51.93 -0.37 1.65 16 LS Contribution 247.10 15.07 3.72 3.72 Total: -1.00 -28.54 247.10 -8.27 -36.81 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -5.20 Total: -2.37 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -1.38 Total: -20.24 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.33 Total: -37.96 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -28.54 -8.27 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865511.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.621 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds