Wall clock time and date at job start Mon Mar 30 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99895 * 2 1 4 4 H 1.48496 * 109.47116 * 240.00179 * 3 2 1 5 5 H 1.48501 * 109.46903 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46877 * 120.00049 * 3 2 1 7 7 C 1.37872 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00027 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.42845 * 302.54340 * 9 7 2 11 11 C 1.54982 * 110.60311 * 65.16753 * 9 7 2 12 12 C 1.55191 * 104.93483 * 121.22667 * 11 9 7 13 13 N 1.47091 * 103.52327 * 23.99377 * 12 11 9 14 14 C 1.45668 * 116.53235 * 197.59537 * 13 12 11 15 15 C 1.53624 * 107.80490 * 182.65796 * 14 13 12 16 16 C 1.52818 * 110.70705 * 302.62143 * 15 14 13 17 17 C 1.53664 * 110.57224 * 53.76837 * 16 15 14 18 18 C 1.48724 * 103.70331 * 317.76837 * 13 12 11 19 19 H 1.09002 * 110.33949 * 286.15720 * 18 13 12 20 20 H 0.96995 * 119.99939 * 359.97438 * 1 2 3 21 21 H 1.08997 * 110.35050 * 240.09256 * 11 9 7 22 22 H 1.09003 * 110.35176 * 2.36128 * 11 9 7 23 23 H 1.08997 * 110.61183 * 265.48501 * 12 11 9 24 24 H 1.09001 * 110.61347 * 142.50560 * 12 11 9 25 25 H 1.08998 * 109.79224 * 63.08137 * 14 13 12 26 26 H 1.09002 * 109.78820 * 302.22936 * 14 13 12 27 27 H 1.09002 * 109.22978 * 182.30558 * 15 14 13 28 28 H 1.08999 * 109.23155 * 62.93819 * 15 14 13 29 29 H 1.09002 * 109.25184 * 174.04181 * 16 15 14 30 30 H 1.09004 * 109.24817 * 293.49956 * 16 15 14 31 31 H 1.09004 * 109.83788 * 63.37185 * 17 16 15 32 32 H 1.08999 * 109.84006 * 184.33703 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.5846 -2.5545 0.8591 11 6 0.4513 -2.6660 -1.3187 12 6 0.9885 -3.9783 -1.9494 13 7 1.5198 -4.7215 -0.7966 14 6 2.4410 -5.8104 -1.0930 15 6 2.8144 -6.4845 0.2359 16 6 3.4247 -5.4710 1.2032 17 6 2.4914 -4.2631 1.3796 18 6 2.2262 -3.6815 -0.0021 19 1 3.1599 -3.4012 -0.4898 20 1 -0.4850 0.8400 0.0004 21 1 -0.6141 -2.7559 -1.1064 22 1 0.6360 -1.8225 -1.9839 23 1 1.7813 -3.7632 -2.6658 24 1 0.1805 -4.5342 -2.4251 25 1 3.3373 -5.4157 -1.5713 26 1 1.9584 -6.5333 -1.7508 27 1 3.5364 -7.2786 0.0452 28 1 1.9189 -6.9147 0.6845 29 1 3.5825 -5.9476 2.1708 30 1 4.3826 -5.1306 0.8099 31 1 1.5532 -4.5836 1.8328 32 1 2.9707 -3.5141 2.0098 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865513.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:48 Heat of formation + Delta-G solvation = -12.675435 kcal Electronic energy + Delta-G solvation = -12913.180838 eV Core-core repulsion = 10872.593272 eV Total energy + Delta-G solvation = -2040.587565 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.06132 -34.52398 -32.68161 -31.03249 -28.25319 -27.08554 -23.89630 -22.38452 -20.72329 -19.58215 -18.95374 -16.26351 -14.97823 -14.48884 -14.27694 -14.19956 -13.65541 -13.00427 -12.58706 -12.10998 -11.90802 -11.82306 -11.04957 -10.86838 -10.65703 -10.47194 -10.29262 -10.23154 -10.17896 -9.75842 -9.57144 -8.97050 -8.70666 -8.34642 -7.64712 -5.97925 -4.01203 3.33226 3.38112 3.40442 4.44824 4.76305 5.25382 5.31864 5.35590 5.41136 5.81323 5.91385 5.96841 6.05911 6.11106 6.19172 6.25244 6.36063 6.42424 6.49220 6.53396 6.75882 6.91210 6.99886 7.24680 7.28021 7.64517 7.72549 7.87623 8.03510 8.08344 8.52782 9.01827 9.62514 11.11697 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051338 B = 0.011185 C = 0.010014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.275844 B = 2502.756678 C = 2795.407257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.058 3.942 10 H 0.037 0.963 11 C -0.092 4.092 12 C 0.040 3.960 13 N -0.531 5.531 14 C 0.054 3.946 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.100 4.100 18 C 0.071 3.929 19 H 0.039 0.961 20 H 0.260 0.740 21 H 0.047 0.953 22 H 0.062 0.938 23 H 0.026 0.974 24 H 0.059 0.941 25 H 0.024 0.976 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 -8.685 -0.652 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.039 3.961 10 H 0.055 0.945 11 C -0.131 4.131 12 C -0.088 4.088 13 N -0.256 5.256 14 C -0.075 4.075 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.138 4.138 18 C -0.036 4.036 19 H 0.057 0.943 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.502 -8.832 -0.405 9.510 hybrid contribution 1.151 1.237 -0.609 1.796 sum 4.654 -7.595 -1.014 8.965 Atomic orbital electron populations 1.69972 1.05824 1.26532 1.50195 1.24959 0.94809 0.98893 0.95192 0.86727 0.79655 0.83447 0.78567 1.20391 1.21324 1.20289 1.21142 0.92616 0.90493 1.51044 0.92872 1.19201 0.92384 0.90463 0.94051 0.94522 1.22499 0.98801 0.92827 0.98984 1.22915 0.97633 0.96237 0.91990 1.63921 1.33615 1.09226 1.18818 1.21953 0.94398 0.94633 0.96477 1.21542 1.00244 0.97383 0.95655 1.21617 0.98833 0.96831 0.98471 1.21427 0.99045 0.95893 0.97388 1.22617 0.96584 0.91794 0.92618 0.94270 0.93014 0.93450 0.91963 0.95616 0.92237 0.95759 0.91918 0.92712 0.91644 0.92734 0.92964 0.91615 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 12.70 55.43 0.70 -24.96 16 2 C 0.06 1.77 5.22 -17.82 -0.09 1.67 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.18 8.32 -34.44 -0.29 -14.47 16 8 H 0.05 1.45 7.62 -52.49 -0.40 1.05 16 9 C 0.06 1.48 2.54 -90.59 -0.23 1.25 16 10 H 0.04 1.02 8.00 -51.93 -0.42 0.61 16 11 C -0.09 -2.23 5.95 -24.52 -0.15 -2.37 16 12 C 0.04 0.82 6.71 -2.56 -0.02 0.80 16 13 N -0.53 -10.58 4.84 -224.50 -1.09 -11.67 16 14 C 0.05 0.90 5.87 -4.17 -0.02 0.88 16 15 C -0.11 -1.62 6.05 -26.50 -0.16 -1.78 16 16 C -0.12 -1.86 5.95 -26.48 -0.16 -2.01 16 17 C -0.10 -1.89 5.64 -26.78 -0.15 -2.04 16 18 C 0.07 1.54 1.99 -66.96 -0.13 1.41 16 19 H 0.04 0.90 7.61 -51.93 -0.40 0.50 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.06 1.61 7.60 -51.93 -0.39 1.21 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.02 0.41 7.99 -51.93 -0.41 -0.01 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 251.18 15.07 3.79 3.79 Total: -1.00 -28.25 251.18 -8.40 -36.65 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.38 Total: -3.47 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.40 Total: -16.67 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.38 Total: -36.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.25 -8.40 -36.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865513.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.977 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds