Wall clock time and date at job start Mon Mar 30 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00464 * 2 1 4 4 H 1.48493 * 109.47295 * 239.99998 * 3 2 1 5 5 H 1.48500 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47094 * 119.99956 * 3 2 1 7 7 C 1.37885 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99628 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00024 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.54008 * 57.38797 * 9 7 2 11 11 C 1.56702 * 111.08541 * 294.11665 * 9 7 2 12 12 C 1.55183 * 105.09277 * 238.99705 * 11 9 7 13 13 N 1.47103 * 103.52059 * 336.01534 * 12 11 9 14 14 C 1.45669 * 116.00681 * 162.11971 * 13 12 11 15 15 C 1.53624 * 107.79821 * 177.66325 * 14 13 12 16 16 C 1.52817 * 110.70407 * 57.36885 * 15 14 13 17 17 C 1.53658 * 110.61402 * 306.25623 * 16 15 14 18 18 C 1.48718 * 103.70273 * 42.23373 * 13 12 11 19 19 H 1.09002 * 110.34604 * 73.85177 * 18 13 12 20 20 H 0.97006 * 119.99409 * 359.97438 * 1 2 3 21 21 H 1.09003 * 110.26250 * 120.08210 * 11 9 7 22 22 H 1.08998 * 110.37516 * 357.96715 * 11 9 7 23 23 H 1.09003 * 110.61713 * 217.51250 * 12 11 9 24 24 H 1.08995 * 110.61544 * 94.52025 * 12 11 9 25 25 H 1.08999 * 109.79929 * 58.08542 * 14 13 12 26 26 H 1.09001 * 109.84157 * 297.25793 * 14 13 12 27 27 H 1.09005 * 109.22955 * 297.05483 * 15 14 13 28 28 H 1.09003 * 109.19812 * 177.67084 * 15 14 13 29 29 H 1.09005 * 109.24770 * 185.96277 * 16 15 14 30 30 H 1.09003 * 109.24542 * 66.55104 * 16 15 14 31 31 H 1.09003 * 109.83927 * 296.60956 * 17 16 15 32 32 H 1.09000 * 109.89501 * 175.67574 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5829 -2.5551 -0.8601 11 6 0.4522 -2.6889 1.3342 12 6 0.9996 -4.0044 1.9491 13 7 1.5292 -4.7333 0.7863 14 6 2.4615 -5.8133 1.0800 15 6 2.8456 -6.4770 -0.2512 16 6 3.4469 -5.4521 -1.2121 17 6 2.5016 -4.2531 -1.3852 18 6 2.2259 -3.6816 -0.0012 19 1 3.1606 -3.4012 0.4845 20 1 -0.4849 0.8401 0.0004 21 1 -0.6137 -2.7825 1.1262 22 1 0.6340 -1.8513 2.0076 23 1 0.1970 -4.5695 2.4232 24 1 1.7948 -3.7921 2.6637 25 1 1.9854 -6.5446 1.7332 26 1 3.3525 -5.4119 1.5629 27 1 1.9560 -6.9149 -0.7039 28 1 3.5761 -7.2636 -0.0619 29 1 3.6122 -5.9223 -2.1816 30 1 4.4004 -5.1036 -0.8152 31 1 1.5681 -4.5811 -1.8426 32 1 2.9738 -3.4958 -2.0109 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:51 Heat of formation + Delta-G solvation = -12.809909 kcal Electronic energy + Delta-G solvation = -12905.715516 eV Core-core repulsion = 10865.122120 eV Total energy + Delta-G solvation = -2040.593396 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03587 -34.45584 -32.69318 -31.03733 -28.21746 -27.09334 -23.89697 -22.38481 -20.69115 -19.61343 -18.95733 -16.26040 -14.98326 -14.48742 -14.27592 -14.19602 -13.65281 -12.99365 -12.59022 -12.11092 -11.90326 -11.82093 -11.05115 -10.87104 -10.65456 -10.46033 -10.28949 -10.23130 -10.17627 -9.76886 -9.56699 -8.96737 -8.73344 -8.34960 -7.66286 -5.98401 -4.01581 3.33074 3.37977 3.40313 4.44567 4.76717 5.24967 5.31662 5.35041 5.41342 5.81057 5.91410 5.96827 6.05843 6.10141 6.19034 6.25012 6.34900 6.42534 6.48863 6.53352 6.75833 6.90819 6.99551 7.22906 7.26181 7.63036 7.69391 7.86366 8.01818 8.07540 8.52436 9.01350 9.62112 11.11277 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051015 B = 0.011185 C = 0.010002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.729830 B = 2502.745672 C = 2798.738002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.062 3.938 10 H 0.037 0.963 11 C -0.096 4.096 12 C 0.039 3.961 13 N -0.528 5.528 14 C 0.053 3.947 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.101 4.101 18 C 0.070 3.930 19 H 0.038 0.962 20 H 0.260 0.740 21 H 0.046 0.954 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -8.658 0.627 9.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.042 3.958 10 H 0.056 0.944 11 C -0.135 4.135 12 C -0.089 4.089 13 N -0.253 5.253 14 C -0.076 4.076 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.138 4.138 18 C -0.037 4.037 19 H 0.056 0.944 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.543 -8.810 0.374 9.503 hybrid contribution 1.152 1.233 0.620 1.797 sum 4.695 -7.577 0.994 8.969 Atomic orbital electron populations 1.69975 1.05839 1.26540 1.50088 1.24966 0.94807 0.98905 0.95139 0.86726 0.79660 0.83428 0.78577 1.20272 1.21318 1.20387 1.21120 0.92609 0.90468 1.51088 0.92837 1.19468 0.92236 0.90329 0.93721 0.94447 1.22796 0.98788 0.92752 0.99157 1.22912 0.97682 0.96352 0.91915 1.64064 1.33233 1.09376 1.18596 1.21973 0.94344 0.94799 0.96483 1.21544 1.00218 0.97403 0.95665 1.21615 0.98828 0.96808 0.98499 1.21440 0.98947 0.96009 0.97445 1.22629 0.96661 0.91766 0.92674 0.94353 0.93007 0.93471 0.92077 0.92207 0.95581 0.91897 0.95730 0.91640 0.92712 0.92741 0.92969 0.91652 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 12.77 55.43 0.71 -24.94 16 2 C 0.06 1.78 5.28 -17.82 -0.09 1.68 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.17 8.35 -34.44 -0.29 -14.46 16 8 H 0.05 1.46 7.62 -52.48 -0.40 1.06 16 9 C 0.06 1.56 2.59 -89.64 -0.23 1.33 16 10 H 0.04 1.04 8.00 -51.93 -0.42 0.63 16 11 C -0.10 -2.31 6.09 -23.58 -0.14 -2.45 16 12 C 0.04 0.80 6.68 -2.56 -0.02 0.78 16 13 N -0.53 -10.52 4.88 -224.49 -1.09 -11.61 16 14 C 0.05 0.88 5.83 -4.17 -0.02 0.85 16 15 C -0.11 -1.62 6.06 -26.50 -0.16 -1.78 16 16 C -0.12 -1.86 5.95 -26.48 -0.16 -2.02 16 17 C -0.10 -1.90 5.65 -26.77 -0.15 -2.06 16 18 C 0.07 1.52 1.95 -66.95 -0.13 1.39 16 19 H 0.04 0.88 7.60 -51.93 -0.39 0.48 16 20 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 21 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 22 H 0.06 1.57 7.70 -51.93 -0.40 1.17 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.03 0.52 8.13 -51.93 -0.42 0.10 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.41 7.98 -51.93 -0.41 0.00 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 251.52 15.07 3.79 3.79 Total: -1.00 -28.24 251.52 -8.40 -36.64 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.39 Total: -3.47 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.40 Total: -16.73 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.39 Total: -36.55 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.24 -8.40 -36.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.830 kcal (2) G-P(sol) polarization free energy of solvation -28.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds