Wall clock time and date at job start Mon Mar 30 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00464 * 2 1 4 4 H 1.48493 * 109.47295 * 239.99998 * 3 2 1 5 5 H 1.48500 * 109.47083 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47094 * 119.99956 * 3 2 1 7 7 C 1.37885 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99628 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00024 * 359.97438 * 7 2 1 10 10 H 1.09004 * 110.54008 * 57.38797 * 9 7 2 11 11 C 1.56702 * 111.08541 * 294.11665 * 9 7 2 12 12 C 1.55183 * 105.09277 * 238.99705 * 11 9 7 13 13 N 1.47103 * 103.52059 * 336.01534 * 12 11 9 14 14 C 1.45669 * 116.00681 * 162.11971 * 13 12 11 15 15 C 1.53624 * 107.79821 * 177.66325 * 14 13 12 16 16 C 1.52817 * 110.70407 * 57.36885 * 15 14 13 17 17 C 1.53658 * 110.61402 * 306.25623 * 16 15 14 18 18 C 1.48718 * 103.70273 * 42.23373 * 13 12 11 19 19 H 1.09002 * 110.34604 * 73.85177 * 18 13 12 20 20 H 0.97006 * 119.99409 * 359.97438 * 1 2 3 21 21 H 1.09003 * 110.26250 * 120.08210 * 11 9 7 22 22 H 1.08998 * 110.37516 * 357.96715 * 11 9 7 23 23 H 1.09003 * 110.61713 * 217.51250 * 12 11 9 24 24 H 1.08995 * 110.61544 * 94.52025 * 12 11 9 25 25 H 1.08999 * 109.79929 * 58.08542 * 14 13 12 26 26 H 1.09001 * 109.84157 * 297.25793 * 14 13 12 27 27 H 1.09005 * 109.22955 * 297.05483 * 15 14 13 28 28 H 1.09003 * 109.19812 * 177.67084 * 15 14 13 29 29 H 1.09005 * 109.24770 * 185.96277 * 16 15 14 30 30 H 1.09003 * 109.24542 * 66.55104 * 16 15 14 31 31 H 1.09003 * 109.83927 * 296.60956 * 17 16 15 32 32 H 1.09000 * 109.89501 * 175.67574 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.5829 -2.5551 -0.8601 11 6 0.4522 -2.6889 1.3342 12 6 0.9996 -4.0044 1.9491 13 7 1.5292 -4.7333 0.7863 14 6 2.4615 -5.8133 1.0800 15 6 2.8456 -6.4770 -0.2512 16 6 3.4469 -5.4521 -1.2121 17 6 2.5016 -4.2531 -1.3852 18 6 2.2259 -3.6816 -0.0012 19 1 3.1606 -3.4012 0.4845 20 1 -0.4849 0.8401 0.0004 21 1 -0.6137 -2.7825 1.1262 22 1 0.6340 -1.8513 2.0076 23 1 0.1970 -4.5695 2.4232 24 1 1.7948 -3.7921 2.6637 25 1 1.9854 -6.5446 1.7332 26 1 3.3525 -5.4119 1.5629 27 1 1.9560 -6.9149 -0.7039 28 1 3.5761 -7.2636 -0.0619 29 1 3.6122 -5.9223 -2.1816 30 1 4.4004 -5.1036 -0.8152 31 1 1.5681 -4.5811 -1.8426 32 1 2.9738 -3.4958 -2.0109 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865515.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:51 Heat of formation + Delta-G solvation = -30.161142 kcal Electronic energy + Delta-G solvation = -12906.467922 eV Core-core repulsion = 10865.122120 eV Total energy + Delta-G solvation = -2041.345802 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63571 -36.09832 -34.54771 -32.75403 -29.85072 -28.88050 -25.83383 -23.83435 -22.24162 -21.39421 -20.56095 -18.30838 -16.78193 -16.24306 -15.89441 -15.78058 -15.09673 -14.43424 -14.14099 -13.99729 -13.62519 -13.34574 -12.90222 -12.65645 -12.43982 -12.21994 -12.04722 -11.82169 -11.65390 -11.45757 -11.04908 -10.83741 -10.74160 -10.47895 -9.24273 -8.13146 -6.23523 1.40581 1.41898 1.49677 2.42219 3.16935 3.25458 3.92580 3.98159 4.09813 4.34324 4.35088 4.51109 4.57260 4.60492 4.69398 4.79673 4.84196 5.02485 5.09927 5.15461 5.25359 5.26826 5.34511 5.41289 5.56161 5.59899 5.78025 5.87628 6.04061 6.41894 6.53135 6.87211 7.43957 8.96342 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051015 B = 0.011185 C = 0.010002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.729830 B = 2502.745672 C = 2798.738002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.052 3.948 10 H 0.001 0.999 11 C -0.092 4.092 12 C 0.049 3.951 13 N -0.533 5.533 14 C 0.048 3.952 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.100 4.100 18 C 0.077 3.923 19 H 0.025 0.975 20 H 0.261 0.739 21 H 0.031 0.969 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.031 0.969 25 H 0.085 0.915 26 H 0.024 0.976 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -10.009 0.870 11.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.019 0.981 11 C -0.131 4.131 12 C -0.079 4.079 13 N -0.258 5.258 14 C -0.080 4.080 15 C -0.144 4.144 16 C -0.152 4.152 17 C -0.138 4.138 18 C -0.031 4.031 19 H 0.043 0.957 20 H 0.070 0.930 21 H 0.050 0.950 22 H 0.054 0.946 23 H 0.102 0.898 24 H 0.049 0.951 25 H 0.103 0.897 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.931 -10.178 0.618 11.326 hybrid contribution 0.688 1.644 0.540 1.862 sum 5.619 -8.534 1.158 10.283 Atomic orbital electron populations 1.70104 1.07301 1.27350 1.50909 1.25763 0.95636 1.02405 0.94732 0.85687 0.78450 0.79098 0.78899 1.19474 1.20899 1.19662 1.21433 0.92683 0.91804 1.51009 0.93072 1.19416 0.92682 0.91682 0.92881 0.98126 1.22619 0.97876 0.94260 0.98326 1.22807 0.98452 0.94599 0.92033 1.64068 1.34199 1.09341 1.18198 1.22173 0.93722 0.93896 0.98253 1.21558 1.01152 0.97592 0.94108 1.21585 0.97786 0.95500 1.00327 1.21413 0.99574 0.97406 0.95442 1.22395 0.94880 0.91132 0.94656 0.95670 0.93010 0.94995 0.94628 0.89797 0.95054 0.89699 0.95735 0.91542 0.89321 0.90281 0.92627 0.92449 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 12.77 21.45 0.27 -54.34 16 2 C 0.01 0.78 5.28 84.66 0.45 1.23 16 3 Si 0.95 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -30.01 8.35 25.60 0.21 -29.80 16 8 H 0.05 2.84 7.62 -2.91 -0.02 2.82 16 9 C 0.05 2.76 2.59 -10.16 -0.03 2.73 16 10 H 0.00 0.03 8.00 -2.39 -0.02 0.01 16 11 C -0.09 -4.55 6.09 32.64 0.20 -4.35 16 12 C 0.05 1.95 6.68 87.01 0.58 2.53 16 13 N -0.53 -20.49 4.88 -864.16 -4.21 -24.70 16 14 C 0.05 1.43 5.83 86.75 0.51 1.93 16 15 C -0.11 -2.71 6.06 30.74 0.19 -2.53 16 16 C -0.11 -3.22 5.95 30.75 0.18 -3.04 16 17 C -0.10 -3.75 5.65 30.57 0.17 -3.58 16 18 C 0.08 3.34 1.95 44.40 0.09 3.43 16 19 H 0.03 1.15 7.60 -2.39 -0.02 1.13 16 20 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 21 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.03 1.89 7.70 -2.39 -0.02 1.87 16 23 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 24 H 0.03 1.21 8.13 -2.39 -0.02 1.19 16 25 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.02 0.75 7.98 -2.39 -0.02 0.73 16 27 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -61.56 251.52 1.69 -59.86 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 1.06 Total: 4.38 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 2.55 Total: -31.44 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -3.94 Total: -79.04 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -61.56 1.69 -59.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865515.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.700 kcal (2) G-P(sol) polarization free energy of solvation -61.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds