Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09003 * 109.47184 * 305.60626 * 3 2 1 5 5 C 1.50702 * 109.46968 * 65.60399 * 3 2 1 6 6 H 1.08000 * 119.99719 * 27.83149 * 5 3 2 7 7 C 1.37874 * 120.00310 * 207.83757 * 5 3 2 8 8 N 1.31517 * 119.99653 * 6.03364 * 7 5 3 9 9 Si 1.86798 * 120.00488 * 186.03773 * 7 5 3 10 10 H 1.48506 * 109.46748 * 89.99556 * 9 7 5 11 11 H 1.48492 * 109.47151 * 209.99749 * 9 7 5 12 12 H 1.48499 * 109.46684 * 329.99945 * 9 7 5 13 13 C 1.50695 * 109.47067 * 185.60093 * 3 2 1 14 14 N 1.33237 * 125.53021 * 300.32530 * 13 3 2 15 15 C 1.30830 * 109.83210 * 180.12830 * 14 13 3 16 16 N 1.34426 * 108.07459 * 359.59997 * 15 14 13 17 17 C 1.46501 * 126.82503 * 180.20884 * 16 15 14 18 18 N 1.30713 * 125.52340 * 120.00360 * 13 3 2 19 19 H 1.09002 * 109.46765 * 293.98538 * 1 2 3 20 20 H 1.08995 * 109.46854 * 53.98619 * 1 2 3 21 21 H 1.09003 * 109.46720 * 173.98842 * 1 2 3 22 22 H 1.09001 * 109.46658 * 240.00489 * 2 1 3 23 23 H 1.08997 * 109.46819 * 120.00315 * 2 1 3 24 24 H 0.96998 * 120.00482 * 180.02562 * 8 7 5 25 25 H 1.07997 * 125.96199 * 179.86015 * 15 14 13 26 26 H 1.08994 * 109.47326 * 90.01610 * 17 16 15 27 27 H 1.09001 * 109.47396 * 210.02742 * 17 16 15 28 28 H 1.09006 * 109.47039 * 330.02475 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9845 -0.8355 5 6 1.6543 2.1117 1.2940 6 1 1.5236 1.5216 2.1890 7 6 1.4679 3.4772 1.3352 8 7 1.5097 4.1803 0.2245 9 14 1.1560 4.3285 2.9683 10 1 2.4514 4.7371 3.5688 11 1 0.3121 5.5302 2.7470 12 1 0.4568 3.3950 3.8875 13 6 3.5407 1.4447 -0.1387 14 7 4.3970 0.8682 0.7037 15 6 5.6234 1.0610 0.2910 16 7 5.5730 1.7706 -0.8496 17 6 6.7106 2.2102 -1.6613 18 7 4.2130 2.0075 -1.1081 19 1 -0.3633 0.4178 0.9390 20 1 -0.3633 0.6042 -0.8312 21 1 -0.3633 -1.0221 -0.1076 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.3790 5.1410 0.2534 25 1 6.5197 0.7078 0.7791 26 1 6.9439 1.4469 -2.4034 27 1 6.4580 3.1427 -2.1660 28 1 7.5763 2.3682 -1.0181 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259975080.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = 75.857034 kcal Electronic energy + Delta-G solvation = -12263.467833 eV Core-core repulsion = 10123.178980 eV Total energy + Delta-G solvation = -2140.288853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97390 -35.09343 -32.86158 -31.72406 -30.15190 -27.66499 -25.84046 -23.71023 -21.22141 -20.61839 -18.93505 -16.56226 -15.92377 -15.07622 -14.48123 -14.18271 -13.28381 -13.16147 -12.75418 -12.67886 -12.21100 -11.34984 -10.95038 -10.92145 -10.81782 -10.40911 -10.35008 -9.99022 -9.38138 -9.25335 -8.81259 -8.73066 -8.43121 -8.22827 -5.98383 -4.00921 2.59912 3.18667 3.35484 3.41177 3.45118 4.15792 4.49233 4.98220 5.10639 5.33887 5.41128 5.62792 5.92833 6.11040 6.26866 6.37593 6.56222 6.85702 7.06795 7.24682 7.31070 7.43732 7.58437 7.77013 7.84201 7.98235 8.40316 9.05666 9.30216 9.62031 11.09656 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.013996 C = 0.011129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.014942 B = 2000.051596 C = 2515.298965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C 0.117 3.883 4 H 0.074 0.926 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.880 5.880 9 Si 0.891 3.109 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.275 3.725 14 N -0.534 5.534 15 C 0.222 3.778 16 N -0.410 5.410 17 C 0.107 3.893 18 N -0.333 5.333 19 H 0.062 0.938 20 H 0.046 0.954 21 H 0.030 0.970 22 H 0.029 0.971 23 H 0.054 0.946 24 H 0.261 0.739 25 H 0.202 0.798 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.314 -4.493 -1.879 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.139 4.139 3 C 0.096 3.904 4 H 0.092 0.908 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.517 5.517 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.196 1.196 13 C -0.006 4.006 14 N -0.261 5.261 15 C -0.076 4.076 16 N -0.203 5.203 17 C -0.037 4.037 18 N -0.159 5.159 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.218 0.782 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.951 -4.063 -2.329 8.382 hybrid contribution 0.611 0.762 0.922 1.343 sum 7.563 -3.301 -1.407 8.371 Atomic orbital electron populations 1.21589 0.96292 0.98614 1.02487 1.21403 0.95388 0.97759 0.99337 1.17533 0.80109 0.92700 1.00079 0.90839 1.20913 1.45745 0.91903 0.94673 0.91971 1.25069 0.94808 0.97812 0.96242 1.69977 1.48788 1.06829 1.26073 0.86601 0.78021 0.79112 0.84352 1.20917 1.21317 1.19562 1.25779 0.99768 0.89459 0.85592 1.70384 0.98427 1.26803 1.30500 1.25829 0.98509 0.95332 0.87902 1.50433 1.06605 1.42846 1.20382 1.21632 0.85519 1.01288 0.95236 1.78189 0.84989 1.27069 1.25663 0.91904 0.93462 0.95066 0.95223 0.92680 0.92960 0.78170 0.91486 0.89857 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.63 37.16 0.36 -2.31 15 2 C -0.10 -2.26 5.37 -26.73 -0.14 -2.40 15 3 C 0.12 3.10 2.29 -92.92 -0.21 2.89 15 4 H 0.07 2.13 7.44 -51.93 -0.39 1.75 15 5 C -0.49 -13.88 7.41 -34.44 -0.26 -14.14 15 6 H 0.06 1.75 7.82 -52.49 -0.41 1.34 15 7 C 0.06 1.83 5.45 -17.82 -0.10 1.73 15 8 N -0.88 -26.22 12.87 55.43 0.71 -25.50 15 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 15 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15 13 C 0.28 7.14 6.63 -156.86 -1.04 6.10 15 14 N -0.53 -12.72 11.19 -11.98 -0.13 -12.86 15 15 C 0.22 4.19 12.66 -90.66 -1.15 3.04 15 16 N -0.41 -7.97 4.04 -69.44 -0.28 -8.25 15 17 C 0.11 1.36 11.53 59.85 0.69 2.05 15 18 N -0.33 -8.33 12.70 32.42 0.41 -7.92 15 19 H 0.06 1.32 7.60 -51.93 -0.39 0.92 15 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 22 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 23 H 0.05 1.25 8.14 -51.93 -0.42 0.82 15 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 25 H 0.20 2.58 8.06 -52.49 -0.42 2.15 15 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 LS Contribution 248.85 15.07 3.75 3.75 Total: -1.00 -33.92 248.85 -6.12 -40.04 By element: Atomic # 1 Polarization: 0.50 SS G_CDS: -3.71 Total: -3.21 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.85 Total: -3.05 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.71 Total: -54.54 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.92 -6.12 -40.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975080.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.893 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds