Wall clock time and date at job start Mon Mar 30 2020 01:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.47201 * 2 1 4 4 H 1.09003 * 109.47184 * 305.60626 * 3 2 1 5 5 C 1.50702 * 109.46968 * 65.60399 * 3 2 1 6 6 H 1.08000 * 119.99719 * 27.83149 * 5 3 2 7 7 C 1.37874 * 120.00310 * 207.83757 * 5 3 2 8 8 N 1.31517 * 119.99653 * 6.03364 * 7 5 3 9 9 Si 1.86798 * 120.00488 * 186.03773 * 7 5 3 10 10 H 1.48506 * 109.46748 * 89.99556 * 9 7 5 11 11 H 1.48492 * 109.47151 * 209.99749 * 9 7 5 12 12 H 1.48499 * 109.46684 * 329.99945 * 9 7 5 13 13 C 1.50695 * 109.47067 * 185.60093 * 3 2 1 14 14 N 1.33237 * 125.53021 * 300.32530 * 13 3 2 15 15 C 1.30830 * 109.83210 * 180.12830 * 14 13 3 16 16 N 1.34426 * 108.07459 * 359.59997 * 15 14 13 17 17 C 1.46501 * 126.82503 * 180.20884 * 16 15 14 18 18 N 1.30713 * 125.52340 * 120.00360 * 13 3 2 19 19 H 1.09002 * 109.46765 * 293.98538 * 1 2 3 20 20 H 1.08995 * 109.46854 * 53.98619 * 1 2 3 21 21 H 1.09003 * 109.46720 * 173.98842 * 1 2 3 22 22 H 1.09001 * 109.46658 * 240.00489 * 2 1 3 23 23 H 1.08997 * 109.46819 * 120.00315 * 2 1 3 24 24 H 0.96998 * 120.00482 * 180.02562 * 8 7 5 25 25 H 1.07997 * 125.96199 * 179.86015 * 15 14 13 26 26 H 1.08994 * 109.47326 * 90.01610 * 17 16 15 27 27 H 1.09001 * 109.47396 * 210.02742 * 17 16 15 28 28 H 1.09006 * 109.47039 * 330.02475 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5971 1.9845 -0.8355 5 6 1.6543 2.1117 1.2940 6 1 1.5236 1.5216 2.1890 7 6 1.4679 3.4772 1.3352 8 7 1.5097 4.1803 0.2245 9 14 1.1560 4.3285 2.9683 10 1 2.4514 4.7371 3.5688 11 1 0.3121 5.5302 2.7470 12 1 0.4568 3.3950 3.8875 13 6 3.5407 1.4447 -0.1387 14 7 4.3970 0.8682 0.7037 15 6 5.6234 1.0610 0.2910 16 7 5.5730 1.7706 -0.8496 17 6 6.7106 2.2102 -1.6613 18 7 4.2130 2.0075 -1.1081 19 1 -0.3633 0.4178 0.9390 20 1 -0.3633 0.6042 -0.8312 21 1 -0.3633 -1.0221 -0.1076 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 1.3790 5.1410 0.2534 25 1 6.5197 0.7078 0.7791 26 1 6.9439 1.4469 -2.4034 27 1 6.4580 3.1427 -2.1660 28 1 7.5763 2.3682 -1.0181 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259975080.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:04 Heat of formation + Delta-G solvation = 53.734796 kcal Electronic energy + Delta-G solvation = -12264.427125 eV Core-core repulsion = 10123.178980 eV Total energy + Delta-G solvation = -2141.248145 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.62540 -36.96329 -34.42953 -33.72127 -31.86083 -29.37289 -27.43405 -25.64401 -22.79761 -22.30933 -20.80021 -18.54174 -17.51022 -16.63463 -16.40725 -15.82765 -15.10774 -14.79393 -14.40377 -13.83764 -13.78651 -13.28431 -12.88409 -12.80261 -12.40169 -12.24975 -12.12565 -11.85475 -11.28554 -11.17808 -10.60031 -10.56814 -10.46193 -9.92728 -8.13013 -6.21842 1.02810 1.39121 1.40073 1.51421 1.84278 2.34463 2.47094 3.17850 3.74285 3.88171 4.29813 4.45887 4.48779 4.59047 4.68835 4.73113 4.89441 5.14623 5.27461 5.41764 5.59710 5.68701 5.76162 5.80989 5.88314 6.29562 6.35570 6.89915 7.42718 7.60247 8.94996 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.013996 C = 0.011129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.014942 B = 2000.051596 C = 2515.298965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.092 4.092 3 C 0.115 3.885 4 H 0.034 0.966 5 C -0.498 4.498 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.285 1.285 11 H -0.281 1.281 12 H -0.259 1.259 13 C 0.253 3.747 14 N -0.576 5.576 15 C 0.238 3.762 16 N -0.407 5.407 17 C 0.096 3.904 18 N -0.378 5.378 19 H 0.050 0.950 20 H 0.038 0.962 21 H 0.067 0.933 22 H 0.036 0.964 23 H 0.052 0.948 24 H 0.259 0.741 25 H 0.264 0.736 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.952 -5.208 -1.110 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.131 4.131 3 C 0.093 3.907 4 H 0.053 0.947 5 C -0.537 4.537 6 H 0.075 0.925 7 C -0.187 4.187 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.212 1.212 11 H -0.207 1.207 12 H -0.183 1.183 13 C -0.028 4.028 14 N -0.304 5.304 15 C -0.058 4.058 16 N -0.198 5.198 17 C -0.045 4.045 18 N -0.206 5.206 19 H 0.069 0.931 20 H 0.058 0.942 21 H 0.086 0.914 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.280 0.720 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.614 -4.785 -1.573 9.979 hybrid contribution 0.272 0.931 0.596 1.139 sum 8.886 -3.854 -0.977 9.735 Atomic orbital electron populations 1.21528 0.94634 1.00670 1.01478 1.21320 0.96813 0.95495 0.99469 1.17382 0.81364 0.94157 0.97782 0.94726 1.21104 1.45340 0.92221 0.95070 0.92483 1.25823 0.94928 0.98526 0.99404 1.70122 1.50425 1.06819 1.28039 0.85624 0.77762 0.78283 0.80452 1.21167 1.20693 1.18287 1.25428 0.99715 0.90850 0.86835 1.70271 1.00115 1.28484 1.31560 1.26884 0.98864 0.93088 0.86956 1.50696 1.05915 1.42157 1.21080 1.22155 0.84444 1.01656 0.96246 1.78015 0.88080 1.27889 1.26586 0.93105 0.94245 0.91409 0.94482 0.92886 0.93183 0.72038 0.88943 0.90646 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.63 71.99 0.69 -4.35 15 2 C -0.09 -4.20 5.37 30.60 0.16 -4.03 15 3 C 0.11 6.24 2.29 -12.29 -0.03 6.21 15 4 H 0.03 2.11 7.44 -2.39 -0.02 2.09 15 5 C -0.50 -28.59 7.41 25.60 0.19 -28.40 15 6 H 0.06 3.25 7.82 -2.91 -0.02 3.22 15 7 C 0.01 0.73 5.45 84.65 0.46 1.20 15 8 N -0.92 -56.14 12.87 21.45 0.28 -55.86 15 9 Si 0.95 45.63 29.54 68.60 2.03 47.66 15 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 15 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 15 13 C 0.25 13.30 6.63 138.63 0.92 14.22 15 14 N -0.58 -26.92 11.19 -191.81 -2.15 -29.07 15 15 C 0.24 8.30 12.66 180.36 2.28 10.58 15 16 N -0.41 -14.95 4.04 -373.62 -1.51 -16.46 15 17 C 0.10 2.11 11.53 127.77 1.47 3.58 15 18 N -0.38 -19.03 12.70 -51.34 -0.65 -19.68 15 19 H 0.05 2.13 7.60 -2.39 -0.02 2.11 15 20 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.04 1.58 8.14 -2.39 -0.02 1.56 15 23 H 0.05 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.26 15.15 8.31 -92.71 -0.77 14.38 15 25 H 0.26 5.30 8.06 -2.91 -0.02 5.27 15 26 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.12 1.66 8.14 -2.38 -0.02 1.64 15 Total: -1.00 -76.26 248.85 5.29 -70.97 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: 1.13 Total: 3.43 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 6.16 Total: -0.99 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -4.03 Total: -121.07 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.26 5.29 -70.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975080.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.709 kcal (2) G-P(sol) polarization free energy of solvation -76.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds