Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34956 * 126.03442 * 2 1 4 4 C 1.35317 * 107.74452 * 180.02562 * 3 2 1 5 5 C 1.39866 * 107.91970 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.89830 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47306 * 154.99768 * 6 5 4 8 8 C 1.50702 * 109.46843 * 35.00225 * 6 5 4 9 9 H 1.08005 * 120.00190 * 273.66345 * 8 6 5 10 10 C 1.37881 * 120.00026 * 93.67269 * 8 6 5 11 11 N 1.31515 * 119.99681 * 173.60061 * 10 8 6 12 12 Si 1.86797 * 119.99749 * 353.60191 * 10 8 6 13 13 H 1.48495 * 109.47353 * 93.11420 * 12 10 8 14 14 H 1.48498 * 109.46801 * 213.11167 * 12 10 8 15 15 H 1.48497 * 109.47219 * 333.10636 * 12 10 8 16 16 C 1.53003 * 109.47228 * 275.00627 * 6 5 4 17 17 N 1.46902 * 109.46899 * 185.56973 * 16 6 5 18 18 N 1.30835 * 108.20597 * 0.26583 * 5 4 3 19 19 H 1.08997 * 109.47113 * 90.00004 * 1 2 3 20 20 H 1.09000 * 109.46841 * 209.99951 * 1 2 3 21 21 H 1.08996 * 109.47375 * 330.00171 * 1 2 3 22 22 H 1.08000 * 126.12429 * 0.03409 * 3 2 1 23 23 H 1.07994 * 126.04015 * 180.02562 * 4 3 2 24 24 H 0.97004 * 119.99544 * 180.02562 * 11 10 8 25 25 H 1.09001 * 109.46762 * 305.56296 * 16 6 5 26 26 H 1.08996 * 109.47232 * 65.56491 * 16 6 5 27 27 H 1.00908 * 110.99409 * 183.07121 * 17 16 6 28 28 H 1.00892 * 111.00304 * 307.01961 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 3.5346 -0.7319 -0.0003 6 6 4.7497 -1.6235 -0.0003 7 1 4.4917 -2.5893 0.4343 8 6 5.8432 -0.9821 0.8146 9 1 6.5160 -0.2742 0.3533 10 6 5.9849 -1.2991 2.1489 11 7 7.0123 -0.8386 2.8287 12 14 4.7177 -2.3827 2.9911 13 1 5.1596 -3.7992 2.9315 14 1 4.5762 -1.9677 4.4099 15 1 3.4100 -2.2426 2.3017 16 6 5.2353 -1.8239 -1.4373 17 7 6.3356 -2.7971 -1.4510 18 7 2.2892 -1.1327 -0.0054 19 1 -0.3633 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5138 22 1 1.9280 2.1194 0.0005 23 1 4.4210 1.2964 -0.0003 24 1 7.1122 -1.0619 3.7673 25 1 4.4139 -2.1957 -2.0498 26 1 5.5861 -0.8731 -1.8382 27 1 6.7072 -2.9095 -2.3824 28 1 7.0610 -2.5319 -0.8019 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980395.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = 47.990234 kcal Electronic energy + Delta-G solvation = -12286.025897 eV Core-core repulsion = 10144.528649 eV Total energy + Delta-G solvation = -2141.497248 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.86184 -37.21363 -34.27337 -33.89660 -31.07539 -30.57712 -26.91588 -26.00603 -22.71764 -21.75845 -20.26255 -18.91521 -17.70453 -16.55786 -16.25171 -16.09193 -15.74815 -14.69099 -14.49475 -14.29537 -13.87284 -13.66640 -13.27321 -13.15733 -12.93018 -12.48764 -11.87350 -11.73312 -11.59286 -11.06137 -10.75046 -9.92762 -9.40295 -9.22781 -8.29287 -6.29788 1.14776 1.30891 1.34438 1.52712 1.90952 2.12539 2.36808 3.08453 3.81944 4.05649 4.16408 4.43369 4.48259 4.50195 4.69115 4.73536 4.93038 4.94654 5.16668 5.29808 5.44003 5.65208 5.94645 6.27846 6.41811 6.43944 6.73341 6.88826 7.06330 7.36912 8.85651 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.030738 B = 0.015027 C = 0.012356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.715264 B = 1862.853355 C = 2265.537663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.394 5.394 3 C 0.054 3.946 4 C -0.279 4.279 5 C 0.087 3.913 6 C 0.085 3.915 7 H 0.033 0.967 8 C -0.485 4.485 9 H 0.049 0.951 10 C 0.037 3.963 11 N -0.934 5.934 12 Si 0.920 3.080 13 H -0.272 1.272 14 H -0.292 1.292 15 H -0.258 1.258 16 C 0.098 3.902 17 N -0.850 5.850 18 N -0.356 5.356 19 H 0.087 0.913 20 H 0.079 0.921 21 H 0.115 0.885 22 H 0.215 0.785 23 H 0.134 0.866 24 H 0.265 0.735 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.343 0.657 28 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.375 3.281 -6.420 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.177 5.177 3 C -0.092 4.092 4 C -0.308 4.308 5 C -0.079 4.079 6 C 0.064 3.936 7 H 0.052 0.948 8 C -0.523 4.523 9 H 0.067 0.933 10 C -0.162 4.162 11 N -0.574 5.574 12 Si 0.747 3.253 13 H -0.198 1.198 14 H -0.219 1.219 15 H -0.183 1.183 16 C -0.034 4.034 17 N -0.381 5.381 18 N -0.179 5.179 19 H 0.105 0.895 20 H 0.098 0.902 21 H 0.134 0.866 22 H 0.232 0.768 23 H 0.152 0.848 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.156 0.844 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.833 1.769 -6.006 14.279 hybrid contribution 0.902 1.119 0.517 1.528 sum -11.931 2.888 -5.488 13.447 Atomic orbital electron populations 1.22093 0.72378 1.05374 1.04344 1.48874 1.07695 1.03437 1.57644 1.22999 0.90259 0.94627 1.01360 1.21502 0.97606 0.94697 1.17015 1.23248 0.92855 0.95746 0.96041 1.17667 0.88168 0.92835 0.94928 0.94845 1.20805 1.12264 1.24952 0.94316 0.93273 1.25546 0.95985 0.96628 0.98072 1.69997 1.30118 1.47513 1.09738 0.86096 0.81923 0.79874 0.77450 1.19754 1.21876 1.18256 1.21398 0.93710 0.92851 0.95418 1.58681 1.15024 1.51737 1.12649 1.77207 1.02315 1.09742 1.28653 0.89489 0.90244 0.86634 0.76847 0.84846 0.92596 0.92741 0.96281 0.84415 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.02 11.47 127.77 1.47 3.48 15 2 N -0.39 -13.35 4.01 -369.57 -1.48 -14.83 15 3 C 0.05 1.72 11.49 83.54 0.96 2.68 15 4 C -0.28 -11.65 10.02 21.99 0.22 -11.43 15 5 C 0.09 4.07 5.36 43.10 0.23 4.30 15 6 C 0.09 4.20 2.01 -12.28 -0.02 4.17 15 7 H 0.03 1.76 5.80 -2.39 -0.01 1.75 15 8 C -0.48 -26.80 7.21 25.60 0.18 -26.62 15 9 H 0.05 2.92 8.06 -2.91 -0.02 2.90 15 10 C 0.04 2.13 5.47 84.66 0.46 2.60 15 11 N -0.93 -57.06 13.96 21.45 0.30 -56.76 15 12 Si 0.92 47.18 26.80 68.60 1.84 49.01 15 13 H -0.27 -13.64 7.11 99.48 0.71 -12.93 15 14 H -0.29 -14.79 7.11 99.48 0.71 -14.08 15 15 H -0.26 -13.45 6.47 99.48 0.64 -12.81 15 16 C 0.10 4.16 6.22 86.30 0.54 4.69 15 17 N -0.85 -33.19 9.64 -186.71 -1.80 -34.99 15 18 N -0.36 -15.82 12.58 -47.39 -0.60 -16.42 15 19 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.12 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.21 4.39 8.06 -2.91 -0.02 4.37 15 23 H 0.13 5.70 7.99 -2.91 -0.02 5.67 15 24 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 25 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 15 27 H 0.34 10.76 9.08 -89.69 -0.81 9.94 15 28 H 0.35 14.72 8.02 -89.70 -0.72 14.00 15 Total: -1.00 -71.03 242.94 1.87 -69.17 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -0.43 Total: 20.95 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 4.04 Total: -16.13 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -3.58 Total: -123.01 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.84 Total: 49.01 kcal Total: -71.03 1.87 -69.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980395.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.157 kcal (2) G-P(sol) polarization free energy of solvation -71.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds