Wall clock time and date at job start Mon Mar 30 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34950 * 126.03734 * 2 1 4 4 C 1.35312 * 107.74703 * 179.75184 * 3 2 1 5 5 C 1.39877 * 107.91742 * 0.39302 * 4 3 2 6 6 C 1.50702 * 125.89882 * 179.86206 * 5 4 3 7 7 H 1.08994 * 109.47354 * 204.72174 * 6 5 4 8 8 C 1.50703 * 109.46886 * 324.72102 * 6 5 4 9 9 H 1.07997 * 120.00606 * 359.97438 * 8 6 5 10 10 C 1.37883 * 119.99615 * 179.97438 * 8 6 5 11 11 N 1.31508 * 120.00165 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99951 * 179.97438 * 10 8 6 13 13 H 1.48509 * 109.46740 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47330 * 119.99918 * 12 10 8 15 15 H 1.48499 * 109.47337 * 240.00458 * 12 10 8 16 16 C 1.52998 * 109.47070 * 84.71744 * 6 5 4 17 17 N 1.46905 * 109.46978 * 65.00154 * 16 6 5 18 18 N 1.30835 * 108.20028 * 359.60491 * 5 4 3 19 19 H 1.09000 * 109.47244 * 270.02547 * 1 2 3 20 20 H 1.09002 * 109.47224 * 30.02074 * 1 2 3 21 21 H 1.08999 * 109.47358 * 150.02151 * 1 2 3 22 22 H 1.08002 * 126.12725 * 0.02562 * 3 2 1 23 23 H 1.07997 * 126.04540 * 180.28221 * 4 3 2 24 24 H 0.96996 * 120.00304 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.47288 * 305.00054 * 16 6 5 26 26 H 1.08995 * 109.47151 * 185.00114 * 16 6 5 27 27 H 1.00901 * 110.99869 * 180.02562 * 17 16 6 28 28 H 1.00896 * 110.99543 * 303.95346 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0056 5 6 3.5346 -0.7321 0.0000 6 6 4.7496 -1.6237 0.0004 7 1 4.4918 -2.5895 -0.4341 8 6 5.8435 -0.9824 -0.8142 9 1 5.6755 -0.0253 -1.2854 10 6 7.0587 -1.6178 -0.9578 11 7 7.2634 -2.7830 -0.3836 12 14 8.4144 -0.8233 -1.9680 13 1 7.9350 0.4757 -2.5049 14 1 9.6036 -0.5956 -1.1084 15 1 8.7818 -1.7185 -3.0944 16 6 5.2347 -1.8240 1.4375 17 7 4.2152 -2.5562 2.2009 18 7 2.2891 -1.1327 -0.0001 19 1 -0.3634 0.0005 1.0277 20 1 -0.3634 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5135 22 1 1.9281 2.1194 0.0004 23 1 4.4211 1.2963 0.0114 24 1 8.1182 -3.2302 -0.4850 25 1 5.4081 -0.8529 1.9012 26 1 6.1633 -2.3946 1.4313 27 1 4.5119 -2.7009 3.1543 28 1 3.3267 -2.0792 2.1674 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:52 Heat of formation + Delta-G solvation = 74.770543 kcal Electronic energy + Delta-G solvation = -12222.503036 eV Core-core repulsion = 10082.167069 eV Total energy + Delta-G solvation = -2140.335966 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.36281 -35.28138 -32.37369 -32.06866 -29.35772 -28.68876 -25.46885 -23.78983 -21.26251 -20.33788 -18.40773 -16.43206 -16.02959 -15.00871 -14.68877 -14.27686 -13.77216 -13.31351 -12.95933 -12.37659 -12.27285 -12.00471 -11.61488 -11.01642 -10.69115 -10.50176 -10.29865 -9.86575 -9.70561 -9.03924 -8.43938 -8.31407 -7.75121 -7.48739 -5.97899 -4.04379 2.59516 3.19065 3.32534 3.40528 3.44711 3.77488 4.45746 4.97359 5.31005 5.34028 5.37049 5.57150 5.85343 5.92008 6.37809 6.68327 6.73053 6.90942 6.99975 7.54030 7.65985 7.71000 7.86248 8.01429 8.27931 8.40857 8.51743 8.73221 8.99968 9.59621 11.08237 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044695 B = 0.011199 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.323858 B = 2499.515922 C = 2923.804358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.400 5.400 3 C 0.025 3.975 4 C -0.252 4.252 5 C 0.117 3.883 6 C 0.121 3.879 7 H 0.050 0.950 8 C -0.509 4.509 9 H 0.063 0.937 10 C 0.062 3.938 11 N -0.885 5.885 12 Si 0.895 3.105 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.073 3.927 17 N -0.852 5.852 18 N -0.311 5.311 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.082 0.918 22 H 0.160 0.840 23 H 0.143 0.857 24 H 0.261 0.739 25 H -0.003 1.003 26 H 0.110 0.890 27 H 0.318 0.682 28 H 0.324 0.676 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.630 6.834 2.300 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.183 5.183 3 C -0.120 4.120 4 C -0.282 4.282 5 C -0.049 4.049 6 C 0.100 3.900 7 H 0.068 0.932 8 C -0.548 4.548 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.058 4.058 17 N -0.379 5.379 18 N -0.132 5.132 19 H 0.081 0.919 20 H 0.094 0.906 21 H 0.100 0.900 22 H 0.177 0.823 23 H 0.160 0.840 24 H 0.071 0.929 25 H 0.016 0.984 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.339 5.131 1.776 10.802 hybrid contribution 1.125 2.161 0.045 2.436 sum -8.214 7.292 1.822 11.133 Atomic orbital electron populations 1.21595 0.75904 1.03463 1.02220 1.48495 1.05801 1.04413 1.59561 1.22345 0.91769 0.92796 1.05084 1.21520 0.95979 0.95760 1.14927 1.23370 0.93350 0.94434 0.93777 1.17385 0.85796 0.93539 0.93300 0.93194 1.21130 0.96964 1.05842 1.30865 0.91852 1.24977 0.98473 0.94841 0.95726 1.69900 1.24203 1.14689 1.43585 0.86476 0.81756 0.79445 0.79986 1.19734 1.21034 1.21018 1.22037 0.96287 0.94264 0.93220 1.58949 1.06378 1.56272 1.16343 1.77437 1.02027 1.06598 1.27152 0.91852 0.90580 0.89970 0.82253 0.83959 0.92878 0.98429 0.87178 0.87180 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.31 11.47 59.85 0.69 2.00 15 2 N -0.40 -7.13 4.01 -68.16 -0.27 -7.40 15 3 C 0.02 0.42 11.49 -17.22 -0.20 0.22 15 4 C -0.25 -5.27 9.69 -40.01 -0.39 -5.66 15 5 C 0.12 2.78 5.29 -82.40 -0.44 2.35 15 6 C 0.12 3.20 2.44 -92.92 -0.23 2.97 15 7 H 0.05 1.50 8.14 -51.93 -0.42 1.07 15 8 C -0.51 -14.05 8.27 -34.44 -0.28 -14.34 15 9 H 0.06 1.72 6.86 -52.49 -0.36 1.36 15 10 C 0.06 1.70 5.29 -17.82 -0.09 1.60 15 11 N -0.89 -25.33 11.29 55.43 0.63 -24.70 15 12 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 13 H -0.27 -6.35 7.11 56.52 0.40 -5.94 15 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 C 0.07 1.82 6.07 -3.82 -0.02 1.79 15 17 N -0.85 -18.83 9.62 -10.37 -0.10 -18.93 15 18 N -0.31 -6.96 12.17 33.67 0.41 -6.55 15 19 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.08 0.67 8.14 -51.93 -0.42 0.25 15 21 H 0.08 0.96 8.14 -51.93 -0.42 0.53 15 22 H 0.16 1.99 8.06 -52.49 -0.42 1.56 15 23 H 0.14 2.90 7.73 -52.49 -0.41 2.49 15 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 25 H 0.00 -0.06 8.14 -51.93 -0.42 -0.49 15 26 H 0.11 3.02 5.95 -51.93 -0.31 2.71 15 27 H 0.32 6.09 9.08 -39.29 -0.36 5.74 15 28 H 0.32 7.02 7.75 -39.29 -0.30 6.72 15 LS Contribution 242.41 15.07 3.65 3.65 Total: -1.00 -31.33 242.41 -5.08 -36.41 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.41 Total: 10.44 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -0.96 Total: -9.06 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.66 Total: -57.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.33 -5.08 -36.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.181 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds