Wall clock time and date at job start Mon Mar 30 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34950 * 126.03734 * 2 1 4 4 C 1.35312 * 107.74703 * 179.75184 * 3 2 1 5 5 C 1.39877 * 107.91742 * 0.39302 * 4 3 2 6 6 C 1.50702 * 125.89882 * 179.86206 * 5 4 3 7 7 H 1.08994 * 109.47354 * 204.72174 * 6 5 4 8 8 C 1.50703 * 109.46886 * 324.72102 * 6 5 4 9 9 H 1.07997 * 120.00606 * 359.97438 * 8 6 5 10 10 C 1.37883 * 119.99615 * 179.97438 * 8 6 5 11 11 N 1.31508 * 120.00165 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99951 * 179.97438 * 10 8 6 13 13 H 1.48509 * 109.46740 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47330 * 119.99918 * 12 10 8 15 15 H 1.48499 * 109.47337 * 240.00458 * 12 10 8 16 16 C 1.52998 * 109.47070 * 84.71744 * 6 5 4 17 17 N 1.46905 * 109.46978 * 65.00154 * 16 6 5 18 18 N 1.30835 * 108.20028 * 359.60491 * 5 4 3 19 19 H 1.09000 * 109.47244 * 270.02547 * 1 2 3 20 20 H 1.09002 * 109.47224 * 30.02074 * 1 2 3 21 21 H 1.08999 * 109.47358 * 150.02151 * 1 2 3 22 22 H 1.08002 * 126.12725 * 0.02562 * 3 2 1 23 23 H 1.07997 * 126.04540 * 180.28221 * 4 3 2 24 24 H 0.96996 * 120.00304 * 179.97438 * 11 10 8 25 25 H 1.09002 * 109.47288 * 305.00054 * 16 6 5 26 26 H 1.08995 * 109.47151 * 185.00114 * 16 6 5 27 27 H 1.00901 * 110.99869 * 180.02562 * 17 16 6 28 28 H 1.00896 * 110.99543 * 303.95346 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 0.0056 5 6 3.5346 -0.7321 0.0000 6 6 4.7496 -1.6237 0.0004 7 1 4.4918 -2.5895 -0.4341 8 6 5.8435 -0.9824 -0.8142 9 1 5.6755 -0.0253 -1.2854 10 6 7.0587 -1.6178 -0.9578 11 7 7.2634 -2.7830 -0.3836 12 14 8.4144 -0.8233 -1.9680 13 1 7.9350 0.4757 -2.5049 14 1 9.6036 -0.5956 -1.1084 15 1 8.7818 -1.7185 -3.0944 16 6 5.2347 -1.8240 1.4375 17 7 4.2152 -2.5562 2.2009 18 7 2.2891 -1.1327 -0.0001 19 1 -0.3634 0.0005 1.0277 20 1 -0.3634 0.8898 -0.5142 21 1 -0.3634 -0.8902 -0.5135 22 1 1.9281 2.1194 0.0004 23 1 4.4211 1.2963 0.0114 24 1 8.1182 -3.2302 -0.4850 25 1 5.4081 -0.8529 1.9012 26 1 6.1633 -2.3946 1.4313 27 1 4.5119 -2.7009 3.1543 28 1 3.3267 -2.0792 2.1674 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:52 Heat of formation + Delta-G solvation = 50.940301 kcal Electronic energy + Delta-G solvation = -12223.536393 eV Core-core repulsion = 10082.167069 eV Total energy + Delta-G solvation = -2141.369323 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.88191 -37.17869 -34.20138 -33.73375 -30.86889 -30.52661 -26.89667 -25.80677 -23.10296 -21.77095 -20.14174 -18.29487 -17.65091 -16.80015 -16.36004 -15.91047 -15.58882 -14.87873 -14.44520 -14.11203 -13.71251 -13.32683 -13.18936 -12.91901 -12.58151 -12.39413 -12.26028 -11.70313 -11.48333 -10.99678 -10.52219 -9.93730 -9.36117 -9.23934 -8.08134 -6.22739 1.15132 1.45721 1.46781 1.59308 1.92797 2.10300 2.47747 3.19118 3.85825 4.05357 4.16908 4.43991 4.52180 4.73320 4.75193 4.87012 4.98579 5.15090 5.26207 5.57499 5.74441 5.81614 6.02772 6.26482 6.41191 6.52263 6.74730 6.89166 7.09315 7.45270 8.98024 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.044695 B = 0.011199 C = 0.009574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.323858 B = 2499.515922 C = 2923.804358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.391 5.391 3 C 0.059 3.941 4 C -0.290 4.290 5 C 0.088 3.912 6 C 0.124 3.876 7 H -0.002 1.002 8 C -0.525 4.525 9 H 0.062 0.938 10 C 0.013 3.987 11 N -0.916 5.916 12 Si 0.964 3.036 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.283 1.283 16 C 0.087 3.913 17 N -0.851 5.851 18 N -0.345 5.345 19 H 0.085 0.915 20 H 0.118 0.882 21 H 0.080 0.920 22 H 0.218 0.782 23 H 0.138 0.862 24 H 0.263 0.737 25 H -0.002 1.002 26 H 0.083 0.917 27 H 0.336 0.664 28 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.981 8.975 2.197 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.173 5.173 3 C -0.088 4.088 4 C -0.320 4.320 5 C -0.077 4.077 6 C 0.103 3.897 7 H 0.016 0.984 8 C -0.564 4.564 9 H 0.081 0.919 10 C -0.186 4.186 11 N -0.555 5.555 12 Si 0.789 3.211 13 H -0.189 1.189 14 H -0.202 1.202 15 H -0.209 1.209 16 C -0.044 4.044 17 N -0.381 5.381 18 N -0.168 5.168 19 H 0.103 0.897 20 H 0.136 0.864 21 H 0.099 0.901 22 H 0.234 0.766 23 H 0.156 0.844 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.101 0.899 27 H 0.148 0.852 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.714 7.259 1.690 13.052 hybrid contribution 1.362 1.501 0.100 2.030 sum -9.352 8.761 1.789 12.939 Atomic orbital electron populations 1.22114 0.72247 1.05553 1.04333 1.48922 1.07752 1.03439 1.57195 1.23017 0.90060 0.94734 1.00951 1.21584 0.97964 0.94427 1.18007 1.22933 0.92983 0.95460 0.96313 1.17089 0.87396 0.91721 0.93454 0.98359 1.21396 0.97747 1.05925 1.31315 0.91935 1.25809 1.00763 0.95284 0.96736 1.70045 1.24817 1.15967 1.44650 0.85407 0.78702 0.78637 0.78313 1.18886 1.20191 1.20866 1.21684 0.95718 0.93839 0.93204 1.58801 1.06004 1.55808 1.17439 1.77299 1.02099 1.09197 1.28217 0.89670 0.86387 0.90082 0.76572 0.84417 0.92773 0.98404 0.89925 0.85193 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.90 11.47 127.77 1.47 3.37 15 2 N -0.39 -12.77 4.01 -369.56 -1.48 -14.26 15 3 C 0.06 1.80 11.49 83.54 0.96 2.76 15 4 C -0.29 -11.87 9.69 21.99 0.21 -11.65 15 5 C 0.09 4.24 5.29 43.10 0.23 4.47 15 6 C 0.12 6.88 2.44 -12.28 -0.03 6.85 15 7 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 8 C -0.52 -29.88 8.27 25.60 0.21 -29.67 15 9 H 0.06 3.48 6.86 -2.91 -0.02 3.46 15 10 C 0.01 0.73 5.29 84.66 0.45 1.18 15 11 N -0.92 -54.07 11.29 21.45 0.24 -53.83 15 12 Si 0.96 43.93 29.54 68.60 2.03 45.95 15 13 H -0.26 -11.61 7.11 99.48 0.71 -10.90 15 14 H -0.28 -12.16 7.11 99.48 0.71 -11.46 15 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 16 C 0.09 4.50 6.07 86.30 0.52 5.02 15 17 N -0.85 -38.34 9.62 -186.71 -1.80 -40.14 15 18 N -0.34 -15.36 12.17 -47.38 -0.58 -15.93 15 19 H 0.08 1.36 8.14 -2.39 -0.02 1.34 15 20 H 0.12 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.08 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.22 4.02 8.06 -2.91 -0.02 3.99 15 23 H 0.14 5.58 7.73 -2.91 -0.02 5.56 15 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 25 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 26 H 0.08 4.73 5.95 -2.39 -0.01 4.72 15 27 H 0.34 12.90 9.08 -89.69 -0.81 12.09 15 28 H 0.33 14.41 7.75 -89.70 -0.70 13.72 15 Total: -1.00 -70.89 242.41 2.10 -68.80 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: -0.34 Total: 27.08 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.02 Total: -17.68 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -3.61 Total: -124.15 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.89 2.10 -68.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.738 kcal (2) G-P(sol) polarization free energy of solvation -70.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds