Wall clock time and date at job start Mon Mar 30 2020 02:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48504 * 109.46743 * 269.99750 * 3 2 1 5 5 H 1.48495 * 109.47244 * 29.99491 * 3 2 1 6 6 H 1.48498 * 109.47133 * 149.99902 * 3 2 1 7 7 C 1.38816 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99874 * 359.72635 * 7 2 1 10 10 C 1.47677 * 125.83448 * 351.19122 * 9 7 2 11 11 C 1.54987 * 104.85962 * 203.99445 * 10 9 7 12 12 C 1.55347 * 101.67954 * 323.44673 * 11 10 9 13 13 C 1.46142 * 125.83399 * 170.88882 * 9 7 2 14 14 C 1.54068 * 110.97009 * 57.45876 * 13 9 7 15 15 C 1.55039 * 102.69140 * 276.50404 * 14 13 9 16 16 C 1.54332 * 104.29366 * 322.91250 * 15 14 13 17 17 C 1.53431 * 111.35603 * 300.69920 * 13 9 7 18 18 H 0.96994 * 120.00165 * 0.02562 * 1 2 3 19 19 H 1.09004 * 110.36810 * 322.84138 * 10 9 7 20 20 H 1.09002 * 110.35991 * 85.04007 * 10 9 7 21 21 H 1.09000 * 110.98082 * 81.54885 * 11 10 9 22 22 H 1.08997 * 110.98415 * 205.35008 * 11 10 9 23 23 H 1.09002 * 110.76703 * 153.11216 * 12 11 10 24 24 H 1.08993 * 110.77029 * 276.32667 * 12 11 10 25 25 H 1.08996 * 110.76680 * 34.80519 * 14 13 9 26 26 H 1.08999 * 110.76867 * 158.20276 * 14 13 9 27 27 H 1.08999 * 110.46866 * 204.20604 * 15 14 13 28 28 H 1.09000 * 110.46692 * 81.60994 * 15 14 13 29 29 H 1.08998 * 110.03756 * 264.17176 * 16 15 14 30 30 H 1.09002 * 110.03963 * 142.72433 * 16 15 14 31 31 H 1.08998 * 110.07082 * 216.72154 * 17 13 9 32 32 H 1.09002 * 110.06943 * 338.20173 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0067 10 6 -0.1306 -2.5447 0.1965 11 6 -0.3088 -3.9889 0.7300 12 6 0.7864 -4.7543 -0.0625 13 6 1.9101 -3.7145 -0.1795 14 6 3.0027 -3.9881 0.8717 15 6 4.2505 -3.3091 0.2507 16 6 4.1167 -3.5776 -1.2631 17 6 2.6207 -3.8266 -1.5347 18 1 -0.4850 0.8400 -0.0004 19 1 -0.4979 -1.8229 0.9261 20 1 -0.6521 -2.4222 -0.7527 21 1 -0.1189 -4.0351 1.8024 22 1 -1.3014 -4.3725 0.4940 23 1 1.1232 -5.6305 0.4916 24 1 0.4214 -5.0396 -1.0490 25 1 2.7458 -3.5267 1.8251 26 1 3.1648 -5.0594 0.9908 27 1 5.1632 -3.7612 0.6388 28 1 4.2401 -2.2375 0.4501 29 1 4.6978 -4.4574 -1.5392 30 1 4.4595 -2.7106 -1.8280 31 1 2.4770 -4.8237 -1.9511 32 1 2.2344 -3.0748 -2.2230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259989836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:28 Heat of formation + Delta-G solvation = 12.912725 kcal Electronic energy + Delta-G solvation = -13249.154679 eV Core-core repulsion = 11209.676699 eV Total energy + Delta-G solvation = -2039.477979 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.83429 -34.45725 -32.46324 -29.17008 -27.96489 -27.74176 -24.58541 -22.32001 -20.16869 -19.81065 -18.37412 -16.40090 -15.25130 -14.38279 -14.19622 -13.95141 -13.05820 -12.75899 -12.04816 -11.79426 -11.65622 -11.29300 -11.00554 -10.71194 -10.67936 -10.47640 -10.25125 -10.04658 -9.74529 -9.71737 -9.53998 -9.44442 -9.15651 -8.51511 -6.71012 -5.63112 -2.97414 3.42998 3.48285 3.49764 4.55280 5.31043 5.33642 5.42972 5.67228 5.78335 5.85150 5.92542 5.98668 6.17749 6.38167 6.38731 6.44196 6.52341 6.60772 6.62037 6.66064 6.76574 6.85488 6.97479 6.99186 7.08813 7.35291 7.66706 7.80075 7.93469 8.40788 9.30917 9.94356 10.62469 11.47591 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.016820 C = 0.012652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.150577 B = 1664.289597 C = 2212.549126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.217 4.217 8 H 0.085 0.915 9 N -0.583 5.583 10 C 0.166 3.834 11 C -0.149 4.149 12 C -0.119 4.119 13 C 0.185 3.815 14 C -0.127 4.127 15 C -0.124 4.124 16 C -0.115 4.115 17 C -0.129 4.129 18 H 0.250 0.750 19 H 0.081 0.919 20 H 0.018 0.982 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -7.764 0.033 8.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.345 4.345 8 H 0.102 0.898 9 N -0.305 5.305 10 C 0.041 3.959 11 C -0.187 4.187 12 C -0.157 4.157 13 C 0.094 3.906 14 C -0.167 4.167 15 C -0.161 4.161 16 C -0.152 4.152 17 C -0.169 4.169 18 H 0.061 0.939 19 H 0.099 0.901 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.519 -7.500 0.041 8.284 hybrid contribution 0.482 0.919 -0.138 1.047 sum 4.001 -6.580 -0.097 7.702 Atomic orbital electron populations 1.69924 1.04863 1.24730 1.57565 1.24832 0.95647 0.97584 1.02774 0.86202 0.78657 0.83966 0.77514 1.21756 1.21821 1.20752 1.19237 0.90779 0.82165 1.42356 0.89753 1.44347 1.03177 0.99870 1.83127 1.21618 0.84797 0.90836 0.98637 1.23048 0.96952 0.99618 0.99124 1.22476 0.96675 0.96973 0.99538 1.20465 0.91364 0.86791 0.91932 1.22844 0.96277 0.97855 0.99722 1.22486 0.96789 1.01795 0.95079 1.22035 0.96874 0.99658 0.96665 1.22571 0.94959 0.99687 0.99657 0.93942 0.90100 0.96358 0.92492 0.92714 0.92383 0.92279 0.91787 0.93245 0.93766 0.90434 0.93581 0.92737 0.93542 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 10.38 55.49 0.58 -26.66 16 2 C -0.01 -0.36 5.48 -17.43 -0.10 -0.46 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.92 9.36 -15.06 -0.14 -6.06 16 8 H 0.08 2.23 4.88 -52.49 -0.26 1.97 16 9 N -0.58 -14.68 2.90 -155.32 -0.45 -15.13 16 10 C 0.17 4.10 5.57 -2.35 -0.01 4.08 16 11 C -0.15 -2.92 7.10 -24.44 -0.17 -3.09 16 12 C -0.12 -2.18 5.93 -25.20 -0.15 -2.33 16 13 C 0.18 3.84 0.88 -130.95 -0.12 3.72 16 14 C -0.13 -2.43 5.78 -25.10 -0.15 -2.57 16 15 C -0.12 -2.29 6.19 -24.96 -0.15 -2.44 16 16 C -0.11 -2.04 6.82 -25.48 -0.17 -2.22 16 17 C -0.13 -2.52 5.75 -25.95 -0.15 -2.66 16 18 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 19 H 0.08 2.23 6.54 -51.93 -0.34 1.89 16 20 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.06 0.94 7.56 -51.93 -0.39 0.54 16 24 H 0.06 1.04 7.80 -51.93 -0.40 0.63 16 25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.05 0.83 7.73 -51.93 -0.40 0.43 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.60 5.57 -51.93 -0.29 1.31 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.80 7.74 -51.93 -0.40 0.40 16 32 H 0.07 1.48 8.05 -51.93 -0.42 1.06 16 LS Contribution 244.17 15.07 3.68 3.68 Total: -1.00 -28.92 244.17 -7.53 -36.44 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.00 Total: -1.58 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.31 Total: -14.03 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.13 Total: -41.79 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.92 -7.53 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.355 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds