Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48504 * 109.46743 * 269.99750 * 3 2 1 5 5 H 1.48495 * 109.47244 * 29.99491 * 3 2 1 6 6 H 1.48498 * 109.47133 * 149.99902 * 3 2 1 7 7 C 1.38816 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99874 * 359.72635 * 7 2 1 10 10 C 1.47677 * 125.83448 * 351.19122 * 9 7 2 11 11 C 1.54987 * 104.85962 * 203.99445 * 10 9 7 12 12 C 1.55347 * 101.67954 * 323.44673 * 11 10 9 13 13 C 1.46142 * 125.83399 * 170.88882 * 9 7 2 14 14 C 1.54068 * 110.97009 * 57.45876 * 13 9 7 15 15 C 1.55039 * 102.69140 * 276.50404 * 14 13 9 16 16 C 1.54332 * 104.29366 * 322.91250 * 15 14 13 17 17 C 1.53431 * 111.35603 * 300.69920 * 13 9 7 18 18 H 0.96994 * 120.00165 * 0.02562 * 1 2 3 19 19 H 1.09004 * 110.36810 * 322.84138 * 10 9 7 20 20 H 1.09002 * 110.35991 * 85.04007 * 10 9 7 21 21 H 1.09000 * 110.98082 * 81.54885 * 11 10 9 22 22 H 1.08997 * 110.98415 * 205.35008 * 11 10 9 23 23 H 1.09002 * 110.76703 * 153.11216 * 12 11 10 24 24 H 1.08993 * 110.77029 * 276.32667 * 12 11 10 25 25 H 1.08996 * 110.76680 * 34.80519 * 14 13 9 26 26 H 1.08999 * 110.76867 * 158.20276 * 14 13 9 27 27 H 1.08999 * 110.46866 * 204.20604 * 15 14 13 28 28 H 1.09000 * 110.46692 * 81.60994 * 15 14 13 29 29 H 1.08998 * 110.03756 * 264.17176 * 16 15 14 30 30 H 1.09002 * 110.03963 * 142.72433 * 16 15 14 31 31 H 1.08998 * 110.07082 * 216.72154 * 17 13 9 32 32 H 1.09002 * 110.06943 * 338.20173 * 17 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0067 10 6 -0.1306 -2.5447 0.1965 11 6 -0.3088 -3.9889 0.7300 12 6 0.7864 -4.7543 -0.0625 13 6 1.9101 -3.7145 -0.1795 14 6 3.0027 -3.9881 0.8717 15 6 4.2505 -3.3091 0.2507 16 6 4.1167 -3.5776 -1.2631 17 6 2.6207 -3.8266 -1.5347 18 1 -0.4850 0.8400 -0.0004 19 1 -0.4979 -1.8229 0.9261 20 1 -0.6521 -2.4222 -0.7527 21 1 -0.1189 -4.0351 1.8024 22 1 -1.3014 -4.3725 0.4940 23 1 1.1232 -5.6305 0.4916 24 1 0.4214 -5.0396 -1.0490 25 1 2.7458 -3.5267 1.8251 26 1 3.1648 -5.0594 0.9908 27 1 5.1632 -3.7612 0.6388 28 1 4.2401 -2.2375 0.4501 29 1 4.6978 -4.4574 -1.5392 30 1 4.4595 -2.7106 -1.8280 31 1 2.4770 -4.8237 -1.9511 32 1 2.2344 -3.0748 -2.2230 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259989836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = -3.554786 kcal Electronic energy + Delta-G solvation = -13249.868764 eV Core-core repulsion = 11209.676699 eV Total energy + Delta-G solvation = -2040.192064 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47604 -36.12255 -34.41849 -31.10776 -29.48690 -29.34387 -26.55173 -24.01434 -21.92112 -21.27873 -20.13619 -18.33845 -17.01419 -16.04732 -15.98561 -15.67117 -14.74623 -14.34418 -13.72709 -13.52230 -13.38392 -13.08536 -12.85222 -12.54641 -12.51620 -11.97703 -11.94076 -11.74652 -11.44607 -11.29586 -11.13403 -11.03650 -10.95662 -10.60645 -8.73485 -7.76199 -5.10719 1.44343 1.45423 1.53511 2.53010 3.38392 3.66409 3.89791 3.98857 4.23042 4.27560 4.42395 4.43677 4.71538 4.84513 4.86725 4.95562 5.04000 5.07535 5.12842 5.17482 5.24341 5.29928 5.38322 5.42784 5.58536 5.71563 5.79131 5.85625 5.88193 6.36571 7.19778 7.92362 8.58442 9.33920 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.034341 B = 0.016820 C = 0.012652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.150577 B = 1664.289597 C = 2212.549126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.078 4.078 3 Si 0.965 3.035 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.212 4.212 8 H 0.092 0.908 9 N -0.602 5.602 10 C 0.167 3.833 11 C -0.135 4.135 12 C -0.111 4.111 13 C 0.166 3.834 14 C -0.121 4.121 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.127 4.127 18 H 0.241 0.759 19 H 0.042 0.958 20 H -0.014 1.014 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 -10.063 0.157 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.269 4.269 3 Si 0.795 3.205 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.342 4.342 8 H 0.109 0.891 9 N -0.324 5.324 10 C 0.042 3.958 11 C -0.174 4.174 12 C -0.149 4.149 13 C 0.077 3.923 14 C -0.160 4.160 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.166 4.166 18 H 0.051 0.949 19 H 0.061 0.939 20 H 0.004 0.996 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.111 0.889 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.163 -9.836 0.164 11.110 hybrid contribution -0.001 1.575 -0.187 1.586 sum 5.162 -8.261 -0.023 9.742 Atomic orbital electron populations 1.70154 1.06179 1.24585 1.59729 1.25602 0.96475 1.00740 1.04115 0.85253 0.77857 0.80213 0.77224 1.21833 1.22478 1.19370 1.19626 0.91346 0.83256 1.39948 0.89095 1.44616 1.03470 1.01187 1.83129 1.21409 0.84679 0.93537 0.96198 1.22905 0.99073 0.95985 0.99410 1.22513 0.94948 0.97090 1.00307 1.20879 0.92937 0.85235 0.93241 1.22777 0.95537 0.99859 0.97844 1.22454 0.98021 1.00027 0.95622 1.22036 0.96028 1.00781 0.96043 1.22510 0.95862 1.00198 0.98060 0.94912 0.93919 0.99618 0.91959 0.90347 0.88850 0.91390 0.93969 0.89673 0.90699 0.93584 0.90110 0.93851 0.90530 0.95104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.00 10.38 21.65 0.22 -58.78 16 2 C -0.08 -4.51 5.48 84.86 0.47 -4.05 16 3 Si 0.96 47.05 29.55 68.60 2.03 49.08 16 4 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.21 -11.80 9.36 84.03 0.79 -11.01 16 8 H 0.09 4.84 4.88 -2.92 -0.01 4.83 16 9 N -0.60 -30.55 2.90 -645.31 -1.87 -32.43 16 10 C 0.17 8.46 5.57 86.83 0.48 8.95 16 11 C -0.14 -5.07 7.10 32.08 0.23 -4.84 16 12 C -0.11 -3.68 5.93 31.58 0.19 -3.49 16 13 C 0.17 6.54 0.88 4.36 0.00 6.54 16 14 C -0.12 -4.23 5.78 31.65 0.18 -4.04 16 15 C -0.12 -4.21 6.19 31.74 0.20 -4.01 16 16 C -0.11 -3.63 6.82 31.41 0.21 -3.41 16 17 C -0.13 -4.65 5.75 31.10 0.18 -4.47 16 18 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 19 H 0.04 2.46 6.54 -2.38 -0.02 2.44 16 20 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 21 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 23 H 0.09 2.49 7.56 -2.39 -0.02 2.47 16 24 H 0.07 2.14 7.80 -2.39 -0.02 2.12 16 25 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 2.39 7.73 -2.39 -0.02 2.37 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.84 5.57 -2.39 -0.01 1.83 16 29 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.33 7.74 -2.39 -0.02 2.31 16 32 H 0.03 1.33 8.05 -2.39 -0.02 1.31 16 Total: -1.00 -64.59 244.17 4.38 -60.21 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.08 Total: 5.76 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 2.93 Total: -23.84 kcal Atomic # 7 Polarization: -89.56 SS G_CDS: -1.65 Total: -91.20 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -64.59 4.38 -60.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259989836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.653 kcal (2) G-P(sol) polarization free energy of solvation -64.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds