Wall clock time and date at job start Mon Mar 30 2020 02:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99796 * 2 1 4 4 H 1.48508 * 109.46999 * 269.99865 * 3 2 1 5 5 H 1.48493 * 109.47177 * 30.00086 * 3 2 1 6 6 H 1.48504 * 109.47011 * 150.00247 * 3 2 1 7 7 C 1.37876 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99869 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00204 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47571 * 179.97438 * 9 7 2 11 11 H 1.09008 * 115.55073 * 330.69994 * 10 9 7 12 12 C 1.53041 * 117.50850 * 116.44824 * 10 9 7 13 13 C 1.52759 * 59.95254 * 107.47495 * 12 10 9 14 14 C 1.53239 * 117.77989 * 107.68427 * 13 12 10 15 15 C 1.53331 * 108.50583 * 197.18091 * 14 13 12 16 16 C 1.52997 * 109.19997 * 305.70602 * 15 14 13 17 17 N 1.46786 * 109.88430 * 62.26368 * 16 15 14 18 18 C 1.47047 * 111.19699 * 295.20074 * 17 16 15 19 19 H 0.97000 * 120.00046 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47001 * 59.99491 * 9 7 2 21 21 H 1.09004 * 109.46637 * 299.99733 * 9 7 2 22 22 H 1.08995 * 117.50058 * 359.97438 * 12 10 9 23 23 H 1.08993 * 117.50439 * 214.94739 * 12 10 9 24 24 H 1.08997 * 109.62737 * 316.88881 * 14 13 12 25 25 H 1.09000 * 109.62870 * 77.27880 * 14 13 12 26 26 H 1.08994 * 109.51713 * 185.78617 * 15 14 13 27 27 H 1.09006 * 109.51253 * 65.61933 * 15 14 13 28 28 H 1.09003 * 109.40367 * 302.13864 * 16 15 14 29 29 H 1.08999 * 109.40443 * 182.39590 * 16 15 14 30 30 H 1.00899 * 110.99995 * 171.09827 * 17 16 15 31 31 H 1.09003 * 109.56454 * 177.92561 * 18 17 16 32 32 H 1.08996 * 109.56648 * 298.26726 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.3696 -3.3658 0.4808 12 6 4.8277 -3.1011 -1.2152 13 6 5.5296 -2.8518 0.1185 14 6 6.0157 -4.0715 0.9087 15 6 6.2812 -3.6396 2.3558 16 6 7.2442 -2.4507 2.3574 17 7 6.6331 -1.3123 1.6609 18 6 6.4206 -1.6119 0.2371 19 1 -0.4850 0.8400 0.0004 20 1 3.8745 -0.6807 0.8905 21 1 3.8752 -0.6796 -0.8895 22 1 4.9942 -2.3791 -2.0146 23 1 4.7060 -4.1361 -1.5341 24 1 5.2500 -4.8470 0.8926 25 1 6.9340 -4.4541 0.4633 26 1 6.7247 -4.4683 2.9076 27 1 5.3423 -3.3484 2.8269 28 1 8.1675 -2.7319 1.8508 29 1 7.4686 -2.1679 3.3859 30 1 7.1883 -0.4776 1.7759 31 1 5.9332 -0.7647 -0.2455 32 1 7.3802 -1.8048 -0.2425 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259998306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:24 Heat of formation + Delta-G solvation = 9.902057 kcal Electronic energy + Delta-G solvation = -12600.469122 eV Core-core repulsion = 10560.860590 eV Total energy + Delta-G solvation = -2039.608532 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.09833 -35.33866 -32.62690 -31.60524 -29.12163 -26.90265 -23.75480 -22.83234 -21.27126 -19.89579 -17.81692 -16.71037 -15.99334 -14.69072 -14.38706 -13.95059 -13.64564 -13.39949 -12.90376 -12.54351 -12.36465 -12.20579 -11.57529 -11.12316 -10.85965 -10.76630 -10.56145 -10.20103 -10.07156 -9.75718 -9.16230 -9.01935 -8.69977 -8.41714 -8.09745 -5.95075 -3.91145 3.37088 3.44501 3.51011 4.18767 4.54047 4.72760 5.02104 5.11479 5.27070 5.36911 5.41127 5.53258 5.65844 5.72223 5.82238 5.95242 6.09211 6.11055 6.20079 6.27036 6.31079 6.58411 6.70143 6.75919 6.98694 7.27227 7.45800 7.55164 7.62561 7.90715 8.65369 9.10565 9.67959 11.18671 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043637 B = 0.010731 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.507880 B = 2608.635098 C = 2858.807536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.877 3.123 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.015 3.985 10 C -0.087 4.087 11 H 0.094 0.906 12 C -0.180 4.180 13 C -0.142 4.142 14 C -0.078 4.078 15 C -0.115 4.115 16 C 0.063 3.937 17 N -0.682 5.682 18 C 0.100 3.900 19 H 0.261 0.739 20 H 0.033 0.967 21 H 0.008 0.992 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.022 0.978 29 H 0.067 0.933 30 H 0.338 0.662 31 H 0.080 0.920 32 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.847 -4.629 2.124 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.549 4.549 8 H 0.088 0.912 9 C -0.022 4.022 10 C -0.105 4.105 11 H 0.112 0.888 12 C -0.217 4.217 13 C -0.143 4.143 14 C -0.115 4.115 15 C -0.153 4.153 16 C -0.067 4.067 17 N -0.313 5.313 18 C -0.029 4.029 19 H 0.071 0.929 20 H 0.051 0.949 21 H 0.026 0.974 22 H 0.106 0.894 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.040 0.960 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.099 0.901 32 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 14.063 -4.680 2.316 15.001 hybrid contribution 1.227 0.918 -0.456 1.599 sum 15.290 -3.762 1.860 15.855 Atomic orbital electron populations 1.69920 1.06284 1.26689 1.51807 1.25010 0.94706 0.99080 0.94818 0.86806 0.80717 0.83721 0.78300 1.20576 1.21542 1.18572 1.21169 0.89524 0.94298 1.49945 0.91185 1.19211 0.96594 0.89965 0.96404 1.22476 0.89544 1.00484 0.97972 0.88794 1.23063 1.05950 1.01207 0.91501 1.21477 0.96834 0.95930 1.00040 1.21113 1.00053 0.95727 0.94641 1.21565 1.00481 0.96401 0.96819 1.21815 0.94786 0.92004 0.98066 1.60155 1.53274 1.05246 1.12623 1.21431 0.96395 0.97093 0.87934 0.92907 0.94924 0.97403 0.89445 0.89863 0.91928 0.92830 0.92257 0.90613 0.96031 0.91413 0.84492 0.90146 0.96011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.51 -15.02 9.63 -34.44 -0.33 -15.35 16 8 H 0.07 2.21 7.92 -52.49 -0.42 1.79 16 9 C 0.02 0.38 2.94 -27.89 -0.08 0.30 16 10 C -0.09 -1.81 5.39 -90.71 -0.49 -2.30 16 11 H 0.09 2.04 8.00 -51.92 -0.42 1.63 16 12 C -0.18 -3.17 9.64 -26.83 -0.26 -3.43 16 13 C -0.14 -2.43 2.11 -154.54 -0.33 -2.76 16 14 C -0.08 -1.13 5.76 -26.44 -0.15 -1.28 16 15 C -0.11 -1.57 6.11 -26.56 -0.16 -1.73 16 16 C 0.06 0.82 6.44 -3.89 -0.03 0.79 16 17 N -0.68 -10.42 6.85 -113.68 -0.78 -11.20 16 18 C 0.10 1.62 5.88 -3.67 -0.02 1.60 16 19 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 20 H 0.03 0.83 7.09 -51.93 -0.37 0.47 16 21 H 0.01 0.19 6.91 -51.93 -0.36 -0.17 16 22 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 23 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 24 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.02 0.26 8.13 -51.93 -0.42 -0.16 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.34 4.40 8.90 -39.29 -0.35 4.05 16 31 H 0.08 1.43 6.65 -51.93 -0.35 1.08 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 255.28 15.07 3.85 3.85 Total: -1.00 -31.34 255.28 -7.99 -39.33 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.22 Total: 0.63 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.95 Total: -22.33 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.01 Total: -39.11 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.34 -7.99 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259998306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.234 kcal (2) G-P(sol) polarization free energy of solvation -31.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds