Wall clock time and date at job start Mon Mar 30 2020 02:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00076 * 2 1 4 4 H 1.48505 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47491 * 300.00020 * 3 2 1 6 6 H 1.48512 * 109.47005 * 60.00221 * 3 2 1 7 7 C 1.38819 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99654 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99952 * 179.97438 * 9 7 2 11 11 C 1.56256 * 110.16785 * 88.55921 * 10 9 7 12 12 C 1.51735 * 101.91757 * 93.85128 * 11 10 9 13 13 H 1.08996 * 111.64222 * 288.10303 * 12 11 10 14 14 C 1.51736 * 122.51112 * 153.03401 * 12 11 10 15 15 C 1.56258 * 101.91653 * 206.96103 * 14 12 11 16 16 C 1.55912 * 105.86576 * 25.25350 * 15 14 12 17 17 C 1.49967 * 104.08727 * 6.57695 * 16 15 14 18 18 H 1.09001 * 108.49480 * 77.61234 * 17 16 15 19 19 C 1.49969 * 126.88793 * 209.62183 * 17 16 15 20 20 H 0.96997 * 119.99427 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00134 * 0.02562 * 9 7 2 22 22 H 1.09002 * 110.20844 * 326.78700 * 10 9 7 23 23 H 1.08999 * 110.93915 * 212.00662 * 11 10 9 24 24 H 1.08998 * 110.94149 * 335.69552 * 11 10 9 25 25 H 1.09008 * 110.93973 * 88.80922 * 14 12 11 26 26 H 1.08993 * 110.97562 * 325.13494 * 14 12 11 27 27 H 1.08992 * 110.17317 * 266.15150 * 15 14 12 28 28 H 1.08997 * 110.16419 * 144.34736 * 15 14 12 29 29 H 1.09006 * 110.50920 * 247.92461 * 16 15 14 30 30 H 1.09000 * 110.62500 * 125.29057 * 16 15 14 31 31 H 1.09002 * 110.50870 * 31.72621 * 19 17 16 32 32 H 1.08996 * 110.50998 * 269.02270 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.3593 -4.1050 1.4668 12 6 1.1833 -5.0167 1.7637 13 1 0.2585 -4.4530 1.8863 14 6 1.2637 -6.1500 2.7695 15 6 0.1896 -7.1441 2.2219 16 6 0.0733 -6.8477 0.6956 17 6 1.1675 -5.8566 0.4318 18 1 2.1160 -6.3919 0.3894 19 6 1.1782 -4.7857 -0.6180 20 1 -0.4849 0.8401 0.0004 21 1 0.3556 -2.3881 -0.0002 22 1 2.9875 -3.5550 -0.5598 23 1 3.3002 -4.6525 1.5213 24 1 2.3687 -3.2490 2.1416 25 1 1.0001 -5.8034 3.7688 26 1 2.2538 -6.6055 2.7658 27 1 -0.7681 -6.9704 2.7125 28 1 0.5134 -8.1725 2.3814 29 1 -0.8993 -6.4134 0.4639 30 1 0.2328 -7.7562 0.1148 31 1 0.1672 -4.4231 -0.8040 32 1 1.6268 -5.1581 -1.5389 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260010786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:38 Heat of formation + Delta-G solvation = -2.194019 kcal Electronic energy + Delta-G solvation = -12568.724068 eV Core-core repulsion = 10528.591011 eV Total energy + Delta-G solvation = -2040.133057 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.59867 -34.97723 -32.46334 -29.83453 -29.65914 -25.61435 -25.35408 -23.17149 -20.11127 -19.39962 -18.99025 -17.03534 -15.34435 -14.69033 -14.45413 -14.07626 -13.86173 -13.07414 -12.89216 -12.05812 -11.76446 -11.33059 -10.99776 -10.96792 -10.82769 -10.67804 -10.49819 -10.22787 -10.12884 -9.93389 -9.71888 -9.58306 -9.41617 -8.83108 -6.89021 -5.73122 -3.00883 3.45314 3.51027 3.53245 4.52587 4.64640 4.98832 5.04722 5.45335 5.50460 5.58417 5.65793 5.75348 5.82706 5.97882 6.05446 6.07754 6.10505 6.22563 6.29009 6.30815 6.42631 6.52215 6.58957 6.75687 6.81326 6.95408 7.02732 7.21579 7.75533 8.46549 9.56986 10.17373 10.51529 11.49749 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067749 B = 0.008377 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.192846 B = 3341.527449 C = 3388.609396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.177 3.823 11 C -0.133 4.133 12 C -0.103 4.103 13 H 0.077 0.923 14 C -0.113 4.113 15 C -0.122 4.122 16 C -0.106 4.106 17 C -0.113 4.113 18 H 0.057 0.943 19 C -0.112 4.112 20 H 0.254 0.746 21 H 0.383 0.617 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -12.726 2.653 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.066 3.934 11 C -0.174 4.174 12 C -0.121 4.121 13 H 0.096 0.904 14 C -0.150 4.150 15 C -0.159 4.159 16 C -0.143 4.143 17 C -0.132 4.132 18 H 0.076 0.924 19 C -0.150 4.150 20 H 0.064 0.936 21 H 0.217 0.783 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.813 -12.574 2.632 12.974 hybrid contribution 0.127 0.930 0.068 0.941 sum 1.941 -11.644 2.700 12.110 Atomic orbital electron populations 1.69681 1.05090 1.25434 1.58009 1.24745 0.95513 0.97661 1.03219 0.86132 0.78789 0.84235 0.77134 1.20586 1.21929 1.21946 1.19333 0.91080 0.84222 1.42165 0.91130 1.42509 1.05711 0.99764 1.87923 1.21648 0.93945 0.85852 0.91960 1.22734 0.95380 0.98421 1.00849 1.22331 1.00239 0.95197 0.94366 0.90429 1.21979 0.98487 0.96173 0.98389 1.22899 0.98973 0.98666 0.95381 1.21420 0.99040 0.98282 0.95587 1.21595 0.98537 0.95798 0.97274 0.92422 1.21766 1.01150 0.95312 0.96807 0.93636 0.78275 0.93325 0.93276 0.91326 0.92212 0.91982 0.92034 0.92411 0.91868 0.92426 0.91487 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 2 C -0.02 -0.46 5.50 -17.42 -0.10 -0.55 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.68 9.96 -15.06 -0.15 -6.83 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.42 5.16 -50.25 -0.26 -18.68 16 10 C 0.18 3.65 3.64 -64.63 -0.23 3.42 16 11 C -0.13 -2.48 6.30 -25.63 -0.16 -2.64 16 12 C -0.10 -1.70 2.98 -89.46 -0.27 -1.97 16 13 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 14 C -0.11 -1.53 6.60 -25.62 -0.17 -1.70 16 15 C -0.12 -1.48 6.94 -23.43 -0.16 -1.64 16 16 C -0.11 -1.39 6.73 -26.68 -0.18 -1.57 16 17 C -0.11 -1.73 2.52 -91.19 -0.23 -1.96 16 18 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 19 C -0.11 -1.96 6.49 -26.68 -0.17 -2.13 16 20 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.38 10.43 7.54 -40.82 -0.31 10.12 16 22 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 25 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.25 7.68 -51.93 -0.40 0.85 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 255.50 15.07 3.85 3.85 Total: -1.00 -29.50 255.50 -7.84 -37.34 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.31 Total: 5.26 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -1.82 Total: -17.58 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.47 Total: -46.53 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.50 -7.84 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.146 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds