Wall clock time and date at job start Mon Mar 30 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 120.00076 * 2 1 4 4 H 1.48505 * 109.47225 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47491 * 300.00020 * 3 2 1 6 6 H 1.48512 * 109.47005 * 60.00221 * 3 2 1 7 7 C 1.38819 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99654 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00010 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99952 * 179.97438 * 9 7 2 11 11 C 1.56256 * 110.16785 * 88.55921 * 10 9 7 12 12 C 1.51735 * 101.91757 * 93.85128 * 11 10 9 13 13 H 1.08996 * 111.64222 * 288.10303 * 12 11 10 14 14 C 1.51736 * 122.51112 * 153.03401 * 12 11 10 15 15 C 1.56258 * 101.91653 * 206.96103 * 14 12 11 16 16 C 1.55912 * 105.86576 * 25.25350 * 15 14 12 17 17 C 1.49967 * 104.08727 * 6.57695 * 16 15 14 18 18 H 1.09001 * 108.49480 * 77.61234 * 17 16 15 19 19 C 1.49969 * 126.88793 * 209.62183 * 17 16 15 20 20 H 0.96997 * 119.99427 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00134 * 0.02562 * 9 7 2 22 22 H 1.09002 * 110.20844 * 326.78700 * 10 9 7 23 23 H 1.08999 * 110.93915 * 212.00662 * 11 10 9 24 24 H 1.08998 * 110.94149 * 335.69552 * 11 10 9 25 25 H 1.09008 * 110.93973 * 88.80922 * 14 12 11 26 26 H 1.08993 * 110.97562 * 325.13494 * 14 12 11 27 27 H 1.08992 * 110.17317 * 266.15150 * 15 14 12 28 28 H 1.08997 * 110.16419 * 144.34736 * 15 14 12 29 29 H 1.09006 * 110.50920 * 247.92461 * 16 15 14 30 30 H 1.09000 * 110.62500 * 125.29057 * 16 15 14 31 31 H 1.09002 * 110.50870 * 31.72621 * 19 17 16 32 32 H 1.08996 * 110.50998 * 269.02270 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 2.3593 -4.1050 1.4668 12 6 1.1833 -5.0167 1.7637 13 1 0.2585 -4.4530 1.8863 14 6 1.2637 -6.1500 2.7695 15 6 0.1896 -7.1441 2.2219 16 6 0.0733 -6.8477 0.6956 17 6 1.1675 -5.8566 0.4318 18 1 2.1160 -6.3919 0.3894 19 6 1.1782 -4.7857 -0.6180 20 1 -0.4849 0.8401 0.0004 21 1 0.3556 -2.3881 -0.0002 22 1 2.9875 -3.5550 -0.5598 23 1 3.3002 -4.6525 1.5213 24 1 2.3687 -3.2490 2.1416 25 1 1.0001 -5.8034 3.7688 26 1 2.2538 -6.6055 2.7658 27 1 -0.7681 -6.9704 2.7125 28 1 0.5134 -8.1725 2.3814 29 1 -0.8993 -6.4134 0.4639 30 1 0.2328 -7.7562 0.1148 31 1 0.1672 -4.4231 -0.8040 32 1 1.6268 -5.1581 -1.5389 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010786.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:37 Heat of formation + Delta-G solvation = -19.422713 kcal Electronic energy + Delta-G solvation = -12569.471160 eV Core-core repulsion = 10528.591011 eV Total energy + Delta-G solvation = -2040.880149 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.91944 -36.67249 -34.28387 -31.61037 -31.04516 -27.16819 -26.70336 -25.09225 -21.40921 -20.75406 -20.39113 -19.12765 -16.84073 -16.38249 -15.83782 -15.48759 -15.43683 -14.86807 -14.42889 -13.44605 -13.26100 -12.96413 -12.86222 -12.41842 -12.27343 -12.12821 -12.07323 -11.96848 -11.61387 -11.41404 -11.25070 -11.10201 -10.85681 -10.71871 -8.98608 -7.94972 -5.22971 1.45866 1.46806 1.56963 2.55548 3.26097 3.42285 3.78913 3.88950 4.08701 4.29412 4.34916 4.43913 4.47794 4.65205 4.81035 4.84626 4.87735 4.92127 5.01316 5.05761 5.14561 5.24757 5.29446 5.41280 5.42648 5.50146 5.62348 5.67443 5.69966 6.28645 7.32988 8.11616 8.34114 9.28982 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.067749 B = 0.008377 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.192846 B = 3341.527449 C = 3388.609396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.239 4.239 8 H 0.075 0.925 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.125 4.125 12 C -0.106 4.106 13 H 0.046 0.954 14 C -0.109 4.109 15 C -0.116 4.116 16 C -0.105 4.105 17 C -0.104 4.104 18 H 0.073 0.927 19 C -0.105 4.105 20 H 0.250 0.750 21 H 0.371 0.629 22 H 0.044 0.956 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 -14.494 2.886 15.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.371 5.371 10 C 0.054 3.946 11 C -0.165 4.165 12 C -0.125 4.125 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.153 4.153 16 C -0.143 4.143 17 C -0.122 4.122 18 H 0.091 0.909 19 C -0.144 4.144 20 H 0.059 0.941 21 H 0.203 0.797 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.921 -14.385 2.868 14.957 hybrid contribution -0.171 1.432 -0.018 1.443 sum 2.750 -12.953 2.850 13.545 Atomic orbital electron populations 1.69839 1.06637 1.25887 1.59862 1.25576 0.96406 1.01109 1.03995 0.85071 0.78231 0.79823 0.76646 1.19030 1.21965 1.22131 1.19706 0.91446 0.85393 1.40566 0.90731 1.42689 1.05271 1.00967 1.88177 1.21976 0.93932 0.85063 0.93581 1.22543 0.97605 0.97985 0.98363 1.22258 0.97684 0.95586 0.96970 0.93517 1.21986 0.99983 0.95110 0.97558 1.22879 0.98671 0.99517 0.94249 1.21460 0.97644 0.98396 0.96784 1.21560 1.00378 0.95401 0.94905 0.90858 1.21659 0.99481 0.95018 0.98202 0.94101 0.79736 0.93747 0.90779 0.94568 0.92061 0.90464 0.91778 0.89890 0.92750 0.90136 0.93290 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.97 47.22 29.55 68.60 2.03 49.24 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 7 C -0.24 -13.71 9.96 84.04 0.84 -12.87 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.73 -38.47 5.16 -312.88 -1.61 -40.08 16 10 C 0.16 6.76 3.64 47.13 0.17 6.93 16 11 C -0.12 -4.59 6.30 31.31 0.20 -4.39 16 12 C -0.11 -3.42 2.98 -10.05 -0.03 -3.45 16 13 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 14 C -0.11 -2.67 6.60 31.31 0.21 -2.47 16 15 C -0.12 -2.42 6.94 32.74 0.23 -2.19 16 16 C -0.11 -2.46 6.73 30.63 0.21 -2.25 16 17 C -0.10 -2.93 2.52 -11.17 -0.03 -2.96 16 18 H 0.07 1.89 7.96 -2.39 -0.02 1.87 16 19 C -0.11 -3.60 6.49 30.63 0.20 -3.41 16 20 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 21 H 0.37 21.01 7.54 -92.71 -0.70 20.31 16 22 H 0.04 1.85 8.09 -2.39 -0.02 1.83 16 23 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 24 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 25 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.85 7.68 -2.39 -0.02 1.83 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -63.84 255.50 3.53 -60.31 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.38 Total: 22.49 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 2.45 Total: -31.25 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -1.33 Total: -100.80 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.24 kcal Total: -63.84 3.53 -60.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010786.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.890 kcal (2) G-P(sol) polarization free energy of solvation -63.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds