Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86787 * 120.00187 * 2 1 4 4 H 1.48501 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47232 * 299.99523 * 3 2 1 6 6 H 1.48503 * 109.47512 * 59.99356 * 3 2 1 7 7 C 1.37876 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00393 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.47283 * 57.33777 * 9 7 2 11 11 C 1.54998 * 110.64704 * 294.60417 * 9 7 2 12 12 N 1.49087 * 106.84226 * 243.72213 * 11 9 7 13 13 C 1.46663 * 104.28079 * 25.75966 * 12 11 9 14 14 H 1.09002 * 109.89633 * 73.42524 * 13 12 11 15 15 C 1.51605 * 117.23825 * 199.80927 * 13 12 11 16 16 C 1.52757 * 107.81959 * 178.35363 * 15 13 12 17 17 C 1.52565 * 111.54721 * 302.75324 * 16 15 13 18 18 C 1.53737 * 111.46733 * 54.52726 * 17 16 15 19 19 C 1.51757 * 107.26696 * 302.22942 * 18 17 16 20 20 H 1.08998 * 110.28664 * 304.48795 * 19 18 17 21 21 H 0.97001 * 119.99631 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.98918 * 3.06970 * 11 9 7 23 23 H 1.09001 * 109.98700 * 124.37478 * 11 9 7 24 24 H 1.00899 * 111.00001 * 266.16976 * 12 11 9 25 25 H 1.09001 * 109.89119 * 298.19317 * 15 13 12 26 26 H 1.08998 * 109.89516 * 59.29839 * 15 13 12 27 27 H 1.08998 * 109.20599 * 182.09855 * 16 15 13 28 28 H 1.09000 * 108.86336 * 63.17511 * 16 15 13 29 29 H 1.09004 * 109.08415 * 294.01730 * 17 16 15 30 30 H 1.09003 * 109.02731 * 175.00547 * 17 16 15 31 31 H 1.09003 * 109.89792 * 182.78820 * 18 17 16 32 32 H 1.09004 * 109.96412 * 61.70845 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5834 -2.5541 -0.8594 11 6 0.4542 -2.6703 1.3190 12 7 1.0242 -3.8579 2.0172 13 6 2.4021 -3.9419 1.5219 14 1 3.0051 -3.1502 1.9666 15 6 3.1116 -5.2738 1.6670 16 6 4.5021 -5.1323 1.0504 17 6 4.4259 -4.6951 -0.4092 18 6 3.6029 -3.4064 -0.5684 19 6 2.2231 -3.6799 0.0011 20 1 1.7793 -4.5490 -0.4845 21 1 -0.4850 0.8401 -0.0004 22 1 0.5679 -1.7824 1.9410 23 1 -0.5999 -2.8384 1.0982 24 1 0.5067 -4.6938 1.7900 25 1 3.1972 -5.5355 2.7216 26 1 2.5588 -6.0484 1.1354 27 1 5.0195 -6.0899 1.1092 28 1 5.0645 -4.3895 1.6161 29 1 3.9622 -5.4886 -0.9953 30 1 5.4357 -4.5213 -0.7813 31 1 3.5235 -3.1448 -1.6235 32 1 4.0762 -2.5923 -0.0192 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088293.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = -19.177791 kcal Electronic energy + Delta-G solvation = -13036.249938 eV Core-core repulsion = 10995.380409 eV Total energy + Delta-G solvation = -2040.869529 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26797 -34.76268 -32.69541 -30.85782 -27.97404 -27.31747 -24.18613 -21.85647 -20.78142 -19.85088 -18.97622 -15.97919 -15.31204 -14.58540 -13.94775 -13.81425 -13.59082 -13.02178 -12.71940 -12.23861 -11.77738 -11.51471 -11.02262 -10.95559 -10.78792 -10.54620 -10.37037 -10.23184 -10.07798 -9.90997 -9.36404 -8.94512 -8.57635 -8.39331 -7.57197 -5.99319 -4.00659 3.30998 3.39389 3.42451 4.46118 4.95916 5.20172 5.31154 5.34758 5.63545 5.75534 5.94342 6.03167 6.07469 6.12267 6.14747 6.27445 6.47137 6.54443 6.56646 6.77770 6.89273 6.91157 7.02327 7.14772 7.23232 7.58850 7.75396 7.81650 7.98264 8.33569 8.52387 9.02437 9.63161 11.11006 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043170 B = 0.012901 C = 0.011028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.437562 B = 2169.814854 C = 2538.448355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.029 3.971 10 H 0.028 0.972 11 C 0.063 3.937 12 N -0.675 5.675 13 C 0.073 3.927 14 H 0.083 0.917 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.094 4.094 19 C -0.118 4.118 20 H 0.044 0.956 21 H 0.259 0.741 22 H 0.077 0.923 23 H 0.038 0.962 24 H 0.314 0.686 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.696 -7.980 0.819 9.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.010 3.990 10 H 0.046 0.954 11 C -0.065 4.065 12 N -0.301 5.301 13 C -0.038 4.038 14 H 0.101 0.899 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.132 4.132 19 C -0.138 4.138 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.056 0.944 24 H 0.127 0.873 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.669 -7.530 1.511 9.546 hybrid contribution 0.202 0.684 -1.026 1.250 sum 5.872 -6.846 0.485 9.032 Atomic orbital electron populations 1.69982 1.05887 1.26330 1.50830 1.25004 0.94808 0.99043 0.95280 0.86607 0.80186 0.84158 0.77479 1.19812 1.21198 1.21115 1.21256 0.93104 0.89933 1.50085 0.91833 1.19606 0.92897 0.92468 0.94051 0.95375 1.23268 0.96117 0.91515 0.95647 1.63142 1.02563 1.06681 1.57679 1.22213 0.91400 0.96176 0.94014 0.89879 1.21250 0.96056 0.97433 1.00004 1.21284 0.96825 1.00388 0.96491 1.21643 0.99665 0.98654 0.95894 1.21296 0.95270 0.95825 1.00815 1.22445 0.96224 0.98866 0.96251 0.93760 0.93173 0.90446 0.94362 0.87291 0.92195 0.92755 0.92861 0.92308 0.93111 0.92985 0.92602 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 12.64 55.43 0.70 -24.99 16 2 C 0.06 1.66 5.15 -17.82 -0.09 1.56 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -13.59 7.91 -34.44 -0.27 -13.86 16 8 H 0.06 1.68 5.43 -52.48 -0.29 1.39 16 9 C 0.03 0.73 2.79 -90.74 -0.25 0.48 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C 0.06 1.52 6.53 -1.55 -0.01 1.51 16 12 N -0.68 -13.83 7.47 -103.51 -0.77 -14.60 16 13 C 0.07 1.40 2.64 -67.30 -0.18 1.22 16 14 H 0.08 1.79 8.00 -51.93 -0.42 1.38 16 15 C -0.11 -1.70 5.81 -27.56 -0.16 -1.86 16 16 C -0.11 -1.59 5.82 -27.08 -0.16 -1.75 16 17 C -0.12 -1.83 5.85 -26.57 -0.16 -1.99 16 18 C -0.09 -1.78 4.67 -26.98 -0.13 -1.90 16 19 C -0.12 -2.42 2.42 -90.03 -0.22 -2.63 16 20 H 0.04 0.88 8.05 -51.93 -0.42 0.46 16 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 22 H 0.08 2.09 7.41 -51.93 -0.38 1.71 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.31 5.78 8.85 -39.29 -0.35 5.43 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.47 6.21 -51.93 -0.32 1.15 16 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -27.75 246.02 -8.12 -35.86 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.11 Total: 2.90 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.62 Total: -19.22 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: -0.07 Total: -39.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.75 -8.12 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088293.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.685 kcal (2) G-P(sol) polarization free energy of solvation -27.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds