Wall clock time and date at job start Mon Mar 30 2020 02:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86787 * 120.00187 * 2 1 4 4 H 1.48501 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47232 * 299.99523 * 3 2 1 6 6 H 1.48503 * 109.47512 * 59.99356 * 3 2 1 7 7 C 1.37876 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99765 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00393 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.47283 * 57.33777 * 9 7 2 11 11 C 1.54998 * 110.64704 * 294.60417 * 9 7 2 12 12 N 1.49087 * 106.84226 * 243.72213 * 11 9 7 13 13 C 1.46663 * 104.28079 * 25.75966 * 12 11 9 14 14 H 1.09002 * 109.89633 * 73.42524 * 13 12 11 15 15 C 1.51605 * 117.23825 * 199.80927 * 13 12 11 16 16 C 1.52757 * 107.81959 * 178.35363 * 15 13 12 17 17 C 1.52565 * 111.54721 * 302.75324 * 16 15 13 18 18 C 1.53737 * 111.46733 * 54.52726 * 17 16 15 19 19 C 1.51757 * 107.26696 * 302.22942 * 18 17 16 20 20 H 1.08998 * 110.28664 * 304.48795 * 19 18 17 21 21 H 0.97001 * 119.99631 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.98918 * 3.06970 * 11 9 7 23 23 H 1.09001 * 109.98700 * 124.37478 * 11 9 7 24 24 H 1.00899 * 111.00001 * 266.16976 * 12 11 9 25 25 H 1.09001 * 109.89119 * 298.19317 * 15 13 12 26 26 H 1.08998 * 109.89516 * 59.29839 * 15 13 12 27 27 H 1.08998 * 109.20599 * 182.09855 * 16 15 13 28 28 H 1.09000 * 108.86336 * 63.17511 * 16 15 13 29 29 H 1.09004 * 109.08415 * 294.01730 * 17 16 15 30 30 H 1.09003 * 109.02731 * 175.00547 * 17 16 15 31 31 H 1.09003 * 109.89792 * 182.78820 * 18 17 16 32 32 H 1.09004 * 109.96412 * 61.70845 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.5834 -2.5541 -0.8594 11 6 0.4542 -2.6703 1.3190 12 7 1.0242 -3.8579 2.0172 13 6 2.4021 -3.9419 1.5219 14 1 3.0051 -3.1502 1.9666 15 6 3.1116 -5.2738 1.6670 16 6 4.5021 -5.1323 1.0504 17 6 4.4259 -4.6951 -0.4092 18 6 3.6029 -3.4064 -0.5684 19 6 2.2231 -3.6799 0.0011 20 1 1.7793 -4.5490 -0.4845 21 1 -0.4850 0.8401 -0.0004 22 1 0.5679 -1.7824 1.9410 23 1 -0.5999 -2.8384 1.0982 24 1 0.5067 -4.6938 1.7900 25 1 3.1972 -5.5355 2.7216 26 1 2.5588 -6.0484 1.1354 27 1 5.0195 -6.0899 1.1092 28 1 5.0645 -4.3895 1.6161 29 1 3.9622 -5.4886 -0.9953 30 1 5.4357 -4.5213 -0.7813 31 1 3.5235 -3.1448 -1.6235 32 1 4.0762 -2.5923 -0.0192 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088293.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:58 Heat of formation + Delta-G solvation = -37.170601 kcal Electronic energy + Delta-G solvation = -13037.030164 eV Core-core repulsion = 10995.380409 eV Total energy + Delta-G solvation = -2041.649755 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88021 -36.30811 -34.65979 -32.51799 -29.49448 -29.06578 -26.22090 -23.39942 -22.28016 -21.34395 -20.80404 -17.97925 -16.94089 -16.50578 -15.50249 -15.34660 -15.08791 -14.57837 -14.45079 -13.84023 -13.57725 -13.15481 -12.84720 -12.68746 -12.45243 -12.32112 -11.93247 -11.79752 -11.63765 -11.35211 -11.02906 -10.67859 -10.57755 -10.45577 -9.30750 -8.12494 -6.19315 1.38126 1.40449 1.50981 2.42942 3.19733 3.39958 3.90607 4.03308 4.20274 4.34853 4.50085 4.59839 4.64748 4.74253 4.75485 4.80205 4.97449 5.15503 5.19098 5.23755 5.34039 5.36320 5.43398 5.51647 5.59023 5.67056 5.78923 5.88993 5.98119 6.40991 6.74903 6.91982 7.47546 8.98018 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.043170 B = 0.012901 C = 0.011028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.437562 B = 2169.814854 C = 2538.448355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.020 3.980 10 H -0.008 1.008 11 C 0.077 3.923 12 N -0.670 5.670 13 C 0.078 3.922 14 H 0.057 0.943 15 C -0.102 4.102 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.094 4.094 19 C -0.114 4.114 20 H 0.055 0.945 21 H 0.258 0.742 22 H 0.041 0.959 23 H 0.029 0.971 24 H 0.331 0.669 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -9.486 1.053 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.000 4.000 10 H 0.011 0.989 11 C -0.053 4.053 12 N -0.297 5.297 13 C -0.032 4.032 14 H 0.075 0.925 15 C -0.140 4.140 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.132 4.132 19 C -0.134 4.134 20 H 0.073 0.927 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.146 0.854 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.459 -9.057 1.745 11.863 hybrid contribution -0.386 1.141 -1.107 1.636 sum 7.073 -7.916 0.638 10.635 Atomic orbital electron populations 1.70105 1.07293 1.26998 1.52044 1.25782 0.95602 1.02442 0.95239 0.85620 0.79320 0.80101 0.77347 1.18847 1.20858 1.21020 1.21588 0.93382 0.90996 1.49199 0.91647 1.19607 0.93475 0.93982 0.92941 0.98937 1.22876 0.95761 0.91791 0.94833 1.62998 1.03424 1.06185 1.57071 1.22190 0.90433 0.98146 0.92436 0.92488 1.21232 0.96421 0.94884 1.01422 1.21302 0.96072 1.02057 0.95355 1.21581 0.99933 0.96499 0.97107 1.21250 0.94722 0.97638 0.99546 1.22369 0.96252 0.97081 0.97710 0.92687 0.93281 0.94058 0.95231 0.85429 0.90774 0.91325 0.89517 0.92628 0.91880 0.91082 0.93721 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.96 12.64 21.45 0.27 -54.69 16 2 C 0.01 0.42 5.15 84.65 0.44 0.85 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 4 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.51 -28.27 7.91 25.60 0.20 -28.07 16 8 H 0.07 3.51 5.43 -2.91 -0.02 3.49 16 9 C 0.02 1.01 2.79 -10.87 -0.03 0.98 16 10 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 11 C 0.08 3.80 6.53 86.56 0.57 4.37 16 12 N -0.67 -27.02 7.47 -481.40 -3.60 -30.62 16 13 C 0.08 2.93 2.64 45.31 0.12 3.05 16 14 H 0.06 2.44 8.00 -2.39 -0.02 2.42 16 15 C -0.10 -2.80 5.81 30.06 0.17 -2.62 16 16 C -0.11 -2.68 5.82 30.37 0.18 -2.50 16 17 C -0.11 -3.05 5.85 30.70 0.18 -2.87 16 18 C -0.09 -3.43 4.67 30.43 0.14 -3.29 16 19 C -0.11 -4.62 2.42 -10.41 -0.03 -4.64 16 20 H 0.05 2.10 8.05 -2.39 -0.02 2.08 16 21 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 22 H 0.04 2.32 7.41 -2.39 -0.02 2.30 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.33 11.65 8.85 -89.69 -0.79 10.86 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.05 2.11 6.21 -2.39 -0.01 2.09 16 Total: -1.00 -60.87 246.02 0.94 -59.93 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.30 Total: 13.58 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 1.94 Total: -34.74 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -3.33 Total: -85.31 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -60.87 0.94 -59.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088293.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.762 kcal (2) G-P(sol) polarization free energy of solvation -60.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds