Wall clock time and date at job start Mon Mar 30 2020 02:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47025 * 239.99751 * 3 2 1 5 5 H 1.48493 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46810 * 120.00171 * 3 2 1 7 7 C 1.37871 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00276 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.47475 * 61.19861 * 9 7 2 11 11 C 1.54993 * 110.52885 * 298.54800 * 9 7 2 12 12 N 1.49097 * 106.83896 * 238.84164 * 11 9 7 13 13 C 1.46652 * 104.28121 * 334.23929 * 12 11 9 14 14 H 1.09001 * 109.89226 * 286.07160 * 13 12 11 15 15 C 1.51602 * 116.85620 * 160.02109 * 13 12 11 16 16 C 1.53752 * 107.30126 * 181.43673 * 15 13 12 17 17 C 1.52576 * 111.44355 * 57.58026 * 16 15 13 18 18 C 1.53729 * 111.47838 * 305.25753 * 17 16 15 19 19 C 1.51768 * 107.26934 * 57.77320 * 18 17 16 20 20 H 1.08996 * 110.84381 * 55.83900 * 19 18 17 21 21 H 0.96998 * 119.99511 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.98851 * 119.49883 * 11 9 7 23 23 H 1.08997 * 110.01979 * 358.20266 * 11 9 7 24 24 H 1.00900 * 111.00366 * 214.64716 * 12 11 9 25 25 H 1.08997 * 109.88998 * 61.98598 * 15 13 12 26 26 H 1.08998 * 109.95291 * 300.92329 * 15 13 12 27 27 H 1.09001 * 109.08618 * 297.07821 * 16 15 13 28 28 H 1.08998 * 109.03397 * 178.04697 * 16 15 13 29 29 H 1.08999 * 109.07370 * 65.77438 * 17 16 15 30 30 H 1.09000 * 109.07592 * 184.74185 * 17 16 15 31 31 H 1.09000 * 109.89555 * 177.20521 * 18 17 16 32 32 H 1.08995 * 109.89974 * 298.32811 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6345 -2.5828 -0.8968 11 6 0.3779 -2.6239 1.2729 12 7 0.8249 -3.8559 1.9837 13 6 1.3889 -4.6998 0.9252 14 1 0.5865 -5.1190 0.3181 15 6 2.3362 -5.8010 1.3590 16 6 2.8187 -6.5167 0.0866 17 6 3.4918 -5.5454 -0.8786 18 6 2.5741 -4.3586 -1.2140 19 6 2.2177 -3.6803 0.0961 20 1 3.1167 -3.3899 0.6396 21 1 -0.4849 0.8401 0.0004 22 1 -0.6729 -2.7132 0.9975 23 1 0.5228 -1.7523 1.9112 24 1 0.0482 -4.3143 2.4362 25 1 1.8140 -6.5060 2.0057 26 1 3.1870 -5.3724 1.8886 27 1 1.9640 -6.9769 -0.4092 28 1 3.5306 -7.2940 0.3642 29 1 4.4086 -5.1697 -0.4242 30 1 3.7420 -6.0735 -1.7987 31 1 3.0972 -3.6574 -1.8643 32 1 1.6690 -4.7165 -1.7047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:02 Heat of formation + Delta-G solvation = -21.632180 kcal Electronic energy + Delta-G solvation = -12891.053915 eV Core-core repulsion = 10850.077957 eV Total energy + Delta-G solvation = -2040.975959 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08455 -34.78939 -32.70046 -30.87105 -28.15797 -27.50992 -24.05038 -21.89876 -20.72940 -19.52148 -19.03301 -16.13942 -15.33928 -14.61303 -14.10336 -13.98426 -13.51269 -13.15815 -12.51975 -11.92394 -11.68869 -11.62366 -11.46404 -10.87102 -10.75016 -10.62439 -10.35234 -10.25434 -10.14150 -9.82319 -9.40478 -8.89861 -8.74889 -8.38552 -7.56476 -5.98655 -4.00560 3.35212 3.39407 3.42528 4.47423 4.91023 5.17844 5.27403 5.33604 5.57929 5.77404 5.86139 5.98121 5.99533 6.06620 6.18248 6.25670 6.42750 6.52658 6.61751 6.69479 6.72851 6.81293 6.96491 7.14204 7.27967 7.50754 7.76850 7.90667 8.07756 8.28156 8.50878 9.01636 9.63063 11.11334 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051186 B = 0.011150 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.897185 B = 2510.711849 C = 2815.122289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.504 4.504 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.027 0.973 11 C 0.066 3.934 12 N -0.671 5.671 13 C 0.059 3.941 14 H 0.029 0.971 15 C -0.100 4.100 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.105 4.105 19 C -0.079 4.079 20 H 0.072 0.928 21 H 0.260 0.740 22 H 0.017 0.983 23 H 0.078 0.922 24 H 0.314 0.686 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -9.482 0.029 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.045 0.955 11 C -0.062 4.062 12 N -0.298 5.298 13 C -0.052 4.052 14 H 0.047 0.953 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.143 4.143 19 C -0.098 4.098 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.096 0.904 24 H 0.127 0.873 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.631 -9.079 0.318 9.784 hybrid contribution -0.534 0.659 -0.461 0.965 sum 3.097 -8.421 -0.143 8.973 Atomic orbital electron populations 1.69962 1.05883 1.26598 1.50767 1.24996 0.94860 0.99071 0.95202 0.86678 0.79614 0.83233 0.78607 1.20342 1.21400 1.20244 1.21103 0.92749 0.90175 1.50253 0.92602 1.19290 0.92397 0.92310 0.92984 0.95531 1.23169 0.95849 0.90333 0.96871 1.63132 1.32922 1.06754 1.27023 1.22167 0.95842 0.94119 0.93059 0.95264 1.21286 0.99223 0.96770 0.96535 1.21501 0.99762 0.97711 0.96155 1.21564 0.99073 0.96664 0.98210 1.21375 0.98706 0.96043 0.98137 1.21888 0.99121 0.94824 0.94010 0.90982 0.93026 0.96442 0.90392 0.87323 0.93043 0.91483 0.92760 0.92686 0.92401 0.92980 0.91772 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 12.40 55.43 0.69 -25.21 16 2 C 0.06 1.68 5.11 -17.82 -0.09 1.59 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.03 8.37 -34.44 -0.29 -14.32 16 8 H 0.06 1.54 7.67 -52.49 -0.40 1.14 16 9 C 0.05 1.25 2.58 -90.74 -0.23 1.01 16 10 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 11 C 0.07 1.61 6.31 -1.55 -0.01 1.60 16 12 N -0.67 -13.95 7.44 -103.51 -0.77 -14.72 16 13 C 0.06 1.12 2.63 -67.30 -0.18 0.94 16 14 H 0.03 0.57 8.01 -51.93 -0.42 0.15 16 15 C -0.10 -1.59 5.93 -27.05 -0.16 -1.75 16 16 C -0.11 -1.57 5.85 -26.56 -0.16 -1.73 16 17 C -0.12 -1.74 5.85 -26.57 -0.16 -1.90 16 18 C -0.10 -1.90 5.61 -26.98 -0.15 -2.05 16 19 C -0.08 -1.69 2.03 -90.02 -0.18 -1.87 16 20 H 0.07 1.64 7.73 -51.93 -0.40 1.24 16 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.08 2.13 7.32 -51.93 -0.38 1.75 16 24 H 0.31 5.74 8.91 -39.29 -0.35 5.39 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.11 8.07 -51.93 -0.42 0.69 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 LS Contribution 250.07 15.07 3.77 3.77 Total: -1.00 -28.43 250.07 -8.24 -36.67 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -5.30 Total: 1.38 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -1.61 Total: -18.46 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: -0.08 Total: -39.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.43 -8.24 -36.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.038 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds