Wall clock time and date at job start Mon Mar 30 2020 02:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47025 * 239.99751 * 3 2 1 5 5 H 1.48493 * 109.47250 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46810 * 120.00171 * 3 2 1 7 7 C 1.37871 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99930 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00276 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.47475 * 61.19861 * 9 7 2 11 11 C 1.54993 * 110.52885 * 298.54800 * 9 7 2 12 12 N 1.49097 * 106.83896 * 238.84164 * 11 9 7 13 13 C 1.46652 * 104.28121 * 334.23929 * 12 11 9 14 14 H 1.09001 * 109.89226 * 286.07160 * 13 12 11 15 15 C 1.51602 * 116.85620 * 160.02109 * 13 12 11 16 16 C 1.53752 * 107.30126 * 181.43673 * 15 13 12 17 17 C 1.52576 * 111.44355 * 57.58026 * 16 15 13 18 18 C 1.53729 * 111.47838 * 305.25753 * 17 16 15 19 19 C 1.51768 * 107.26934 * 57.77320 * 18 17 16 20 20 H 1.08996 * 110.84381 * 55.83900 * 19 18 17 21 21 H 0.96998 * 119.99511 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.98851 * 119.49883 * 11 9 7 23 23 H 1.08997 * 110.01979 * 358.20266 * 11 9 7 24 24 H 1.00900 * 111.00366 * 214.64716 * 12 11 9 25 25 H 1.08997 * 109.88998 * 61.98598 * 15 13 12 26 26 H 1.08998 * 109.95291 * 300.92329 * 15 13 12 27 27 H 1.09001 * 109.08618 * 297.07821 * 16 15 13 28 28 H 1.08998 * 109.03397 * 178.04697 * 16 15 13 29 29 H 1.08999 * 109.07370 * 65.77438 * 17 16 15 30 30 H 1.09000 * 109.07592 * 184.74185 * 17 16 15 31 31 H 1.09000 * 109.89555 * 177.20521 * 18 17 16 32 32 H 1.08995 * 109.89974 * 298.32811 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6345 -2.5828 -0.8968 11 6 0.3779 -2.6239 1.2729 12 7 0.8249 -3.8559 1.9837 13 6 1.3889 -4.6998 0.9252 14 1 0.5865 -5.1190 0.3181 15 6 2.3362 -5.8010 1.3590 16 6 2.8187 -6.5167 0.0866 17 6 3.4918 -5.5454 -0.8786 18 6 2.5741 -4.3586 -1.2140 19 6 2.2177 -3.6803 0.0961 20 1 3.1167 -3.3899 0.6396 21 1 -0.4849 0.8401 0.0004 22 1 -0.6729 -2.7132 0.9975 23 1 0.5228 -1.7523 1.9112 24 1 0.0482 -4.3143 2.4362 25 1 1.8140 -6.5060 2.0057 26 1 3.1870 -5.3724 1.8886 27 1 1.9640 -6.9769 -0.4092 28 1 3.5306 -7.2940 0.3642 29 1 4.4086 -5.1697 -0.4242 30 1 3.7420 -6.0735 -1.7987 31 1 3.0972 -3.6574 -1.8643 32 1 1.6690 -4.7165 -1.7047 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088302.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:01 Heat of formation + Delta-G solvation = -40.132025 kcal Electronic energy + Delta-G solvation = -12891.856129 eV Core-core repulsion = 10850.077957 eV Total energy + Delta-G solvation = -2041.778172 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.68954 -36.36211 -34.68755 -32.52951 -29.70716 -29.24592 -26.11143 -23.41681 -22.14813 -21.25280 -20.67099 -18.22512 -17.03454 -16.60235 -15.52521 -15.48447 -15.09086 -14.61646 -14.21215 -13.73978 -13.41119 -13.35332 -13.01719 -12.72152 -12.49074 -12.23284 -12.04660 -11.78763 -11.69579 -11.36219 -11.02983 -10.90015 -10.55150 -10.42951 -9.33324 -8.14858 -6.24129 1.40060 1.42091 1.49516 2.42472 3.15935 3.36577 3.82846 4.01444 4.19673 4.35284 4.46621 4.57004 4.63634 4.68458 4.69410 4.73795 4.93796 5.08732 5.14398 5.24251 5.31655 5.35892 5.39154 5.48526 5.58179 5.65490 5.75149 5.78965 6.13005 6.38796 6.66341 6.86397 7.43157 8.94526 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051186 B = 0.011150 C = 0.009944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.897185 B = 2510.711849 C = 2815.122289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.040 3.960 10 H -0.004 1.004 11 C 0.080 3.920 12 N -0.671 5.671 13 C 0.063 3.937 14 H 0.031 0.969 15 C -0.095 4.095 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.104 4.104 19 C -0.077 4.077 20 H 0.054 0.946 21 H 0.261 0.739 22 H 0.005 0.995 23 H 0.043 0.957 24 H 0.331 0.669 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.292 -10.995 0.095 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.069 0.931 9 C 0.021 3.979 10 H 0.014 0.986 11 C -0.049 4.049 12 N -0.299 5.299 13 C -0.047 4.047 14 H 0.049 0.951 15 C -0.133 4.133 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.096 4.096 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.023 0.977 23 H 0.062 0.938 24 H 0.146 0.854 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.772 -10.615 0.387 11.644 hybrid contribution -0.922 1.131 -0.482 1.537 sum 3.850 -9.483 -0.095 10.235 Atomic orbital electron populations 1.70081 1.07236 1.27385 1.51383 1.25782 0.95715 1.02505 0.94769 0.85660 0.78440 0.79020 0.78866 1.19466 1.20857 1.19759 1.21421 0.92756 0.91673 1.50389 0.93082 1.19274 0.93093 0.93585 0.91953 0.98577 1.22772 0.95001 0.91055 0.96096 1.63042 1.33491 1.06161 1.27206 1.22256 0.96039 0.94234 0.92196 0.95110 1.21289 0.98099 0.95861 0.98048 1.21505 1.00784 0.97725 0.94701 1.21533 0.98081 0.95513 0.99850 1.21363 0.99517 0.97161 0.96155 1.21778 0.97592 0.94033 0.96198 0.92761 0.93009 0.97672 0.93800 0.85439 0.90885 0.92210 0.91810 0.89662 0.92420 0.90414 0.93018 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.86 12.40 21.45 0.27 -54.59 16 2 C 0.01 0.62 5.11 84.65 0.43 1.05 16 3 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.52 -30.00 8.37 25.60 0.21 -29.79 16 8 H 0.05 2.89 7.67 -2.91 -0.02 2.87 16 9 C 0.04 2.10 2.58 -10.87 -0.03 2.07 16 10 H 0.00 -0.22 8.05 -2.39 -0.02 -0.24 16 11 C 0.08 4.03 6.31 86.56 0.55 4.58 16 12 N -0.67 -27.62 7.44 -481.41 -3.58 -31.20 16 13 C 0.06 2.32 2.63 45.32 0.12 2.44 16 14 H 0.03 1.14 8.01 -2.39 -0.02 1.12 16 15 C -0.09 -2.71 5.93 30.39 0.18 -2.53 16 16 C -0.11 -2.58 5.85 30.71 0.18 -2.40 16 17 C -0.11 -2.99 5.85 30.70 0.18 -2.81 16 18 C -0.10 -3.68 5.61 30.43 0.17 -3.51 16 19 C -0.08 -3.27 2.03 -10.40 -0.02 -3.30 16 20 H 0.05 2.48 7.73 -2.39 -0.02 2.46 16 21 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 22 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 23 H 0.04 2.49 7.32 -2.39 -0.02 2.47 16 24 H 0.33 11.76 8.91 -89.69 -0.80 10.96 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.81 8.07 -2.39 -0.02 1.80 16 27 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -62.25 250.07 0.96 -61.28 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.28 Total: 11.87 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 1.97 Total: -34.19 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -3.32 Total: -85.80 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.25 0.96 -61.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088302.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.153 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds