Wall clock time and date at job start Mon Mar 30 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36884 * 126.39536 * 2 1 4 4 C 1.34675 * 106.81462 * 179.97438 * 3 2 1 5 5 N 1.34121 * 108.02077 * 359.97438 * 4 3 2 6 6 C 1.30497 * 109.25704 * 359.72844 * 5 4 3 7 7 C 1.50703 * 125.64980 * 180.29595 * 6 5 4 8 8 H 1.09005 * 109.47205 * 180.17246 * 7 6 5 9 9 C 1.50695 * 109.47311 * 60.17148 * 7 6 5 10 10 H 1.08000 * 120.00099 * 274.89617 * 9 7 6 11 11 C 1.37879 * 119.99922 * 94.89534 * 9 7 6 12 12 N 1.31510 * 119.99884 * 5.39428 * 11 9 7 13 13 Si 1.86804 * 120.00037 * 185.38866 * 11 9 7 14 14 H 1.48498 * 109.46911 * 60.00012 * 13 11 9 15 15 H 1.48494 * 109.47153 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47286 * 300.00395 * 13 11 9 17 17 C 1.53005 * 109.46895 * 300.17067 * 7 6 5 18 18 N 1.46903 * 109.46937 * 185.31703 * 17 7 6 19 19 H 1.09000 * 109.46799 * 90.02401 * 1 2 3 20 20 H 1.09003 * 109.47232 * 330.03225 * 1 2 3 21 21 H 1.08996 * 109.47227 * 210.02703 * 1 2 3 22 22 H 1.08000 * 126.59355 * 359.96009 * 3 2 1 23 23 H 1.08005 * 125.98554 * 179.97438 * 4 3 2 24 24 H 0.97006 * 119.99819 * 179.97438 * 12 11 9 25 25 H 1.08996 * 109.46932 * 305.31484 * 17 7 6 26 26 H 1.09001 * 109.47020 * 65.31658 * 17 7 6 27 27 H 1.00895 * 110.99861 * 56.04342 * 18 17 7 28 28 H 1.00900 * 110.99599 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0006 5 7 3.5096 -0.6902 0.0015 6 6 2.2664 -1.0869 0.0073 7 6 1.8019 -2.5205 0.0166 8 1 0.7122 -2.5495 0.0169 9 6 2.3230 -3.2095 1.2514 10 1 3.3133 -3.6405 1.2520 11 6 1.5355 -3.2897 2.3803 12 7 0.2929 -2.8602 2.3471 13 14 2.2335 -4.0084 3.9569 14 1 3.4035 -3.2041 4.3920 15 1 1.1933 -3.9813 5.0163 16 1 2.6589 -5.4106 3.7159 17 6 2.3307 -3.2360 -1.2282 18 7 1.7749 -4.5946 -1.2854 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 0.8903 0.5133 21 1 -0.3633 -0.8897 0.5142 22 1 1.9612 2.1346 -0.0006 23 1 4.4369 1.2612 0.0003 24 1 -0.2613 -2.9170 3.1413 25 1 2.0322 -2.6835 -2.1191 26 1 3.4184 -3.2900 -1.1817 27 1 0.7664 -4.5738 -1.2642 28 1 2.1097 -5.0883 -2.0992 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088883.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:50 Heat of formation + Delta-G solvation = 57.299741 kcal Electronic energy + Delta-G solvation = -12480.422899 eV Core-core repulsion = 10339.329341 eV Total energy + Delta-G solvation = -2141.093557 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.00117 -35.07481 -33.01104 -32.25300 -29.86129 -26.94491 -25.98498 -24.16183 -21.32276 -20.24368 -18.55771 -16.43714 -16.19161 -14.85991 -14.59753 -14.36684 -13.71806 -13.51441 -12.67919 -12.37085 -12.20605 -12.03017 -11.84630 -11.29048 -10.76046 -10.68914 -10.46652 -9.55523 -9.24277 -8.82904 -8.61620 -8.44031 -7.69219 -7.30325 -6.03918 -3.97941 3.04062 3.40719 3.41730 3.48700 3.79477 4.24040 4.51911 5.23178 5.48425 5.57048 5.63897 5.76638 5.93834 6.22902 6.26714 6.30219 6.52585 6.63112 6.90906 7.28251 7.50425 7.77041 7.96351 7.98038 8.25382 8.32345 8.43372 9.05260 9.28248 9.62639 11.06735 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.015326 C = 0.013125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.929065 B = 1826.502922 C = 2132.785431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.462 5.462 3 C -0.103 4.103 4 C -0.038 4.038 5 N -0.508 5.508 6 C 0.269 3.731 7 C 0.107 3.893 8 H 0.071 0.929 9 C -0.459 4.459 10 H 0.062 0.938 11 C 0.061 3.939 12 N -0.904 5.904 13 Si 0.898 3.102 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.275 1.275 17 C 0.087 3.913 18 N -0.830 5.830 19 H 0.059 0.941 20 H 0.068 0.932 21 H 0.110 0.890 22 H 0.156 0.844 23 H 0.153 0.847 24 H 0.260 0.740 25 H -0.008 1.008 26 H 0.067 0.933 27 H 0.334 0.666 28 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 4.279 -5.371 7.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.144 5.144 3 C -0.235 4.235 4 C -0.187 4.187 5 N -0.226 5.226 6 C 0.005 3.995 7 C 0.086 3.914 8 H 0.089 0.911 9 C -0.498 4.498 10 H 0.080 0.920 11 C -0.139 4.139 12 N -0.544 5.544 13 Si 0.726 3.274 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.200 1.200 17 C -0.044 4.044 18 N -0.358 5.358 19 H 0.077 0.923 20 H 0.087 0.913 21 H 0.128 0.872 22 H 0.173 0.827 23 H 0.171 0.829 24 H 0.070 0.930 25 H 0.010 0.990 26 H 0.085 0.915 27 H 0.146 0.854 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.061 3.701 -4.565 5.971 hybrid contribution -0.860 0.919 0.179 1.271 sum -1.921 4.620 -4.385 6.653 Atomic orbital electron populations 1.21977 0.77784 1.05322 1.01903 1.45402 1.07159 1.06707 1.55144 1.22336 0.91961 0.92113 1.17116 1.22122 0.95512 0.92369 1.08712 1.70251 1.19645 1.10321 1.22390 1.24957 0.84803 0.92006 0.97708 1.17540 0.98063 0.81601 0.94193 0.91120 1.20719 1.01231 1.32771 0.95032 0.92018 1.24935 0.94703 0.95248 0.99055 1.69807 1.06590 1.48701 1.29288 0.86551 0.78565 0.79760 0.82539 1.20398 1.21625 1.19994 1.21695 0.99814 0.87728 0.95183 1.58445 1.13015 1.17950 1.46375 0.92270 0.91300 0.87186 0.82662 0.82913 0.93029 0.99035 0.91476 0.85425 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.84 59.85 0.65 1.94 15 2 N -0.46 -9.86 3.15 -121.28 -0.38 -10.24 15 3 C -0.10 -2.00 11.58 -16.56 -0.19 -2.19 15 4 C -0.04 -0.81 11.87 -17.81 -0.21 -1.02 15 5 N -0.51 -12.62 11.25 -10.81 -0.12 -12.74 15 6 C 0.27 6.57 6.39 -155.42 -0.99 5.57 15 7 C 0.11 2.64 2.40 -92.92 -0.22 2.42 15 8 H 0.07 1.80 5.82 -51.93 -0.30 1.50 15 9 C -0.46 -12.73 8.03 -34.44 -0.28 -13.01 15 10 H 0.06 1.79 7.82 -52.49 -0.41 1.38 15 11 C 0.06 1.69 5.45 -17.82 -0.10 1.59 15 12 N -0.90 -24.93 12.77 55.43 0.71 -24.23 15 13 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 15 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 15 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 17 C 0.09 1.90 6.14 -3.82 -0.02 1.88 15 18 N -0.83 -16.21 9.35 -10.37 -0.10 -16.30 15 19 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.11 2.21 7.03 -51.93 -0.37 1.85 15 22 H 0.16 2.38 8.06 -52.49 -0.42 1.95 15 23 H 0.15 2.68 8.06 -52.48 -0.42 2.26 15 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 25 H -0.01 -0.17 8.14 -51.93 -0.42 -0.60 15 26 H 0.07 1.55 8.14 -51.93 -0.42 1.13 15 27 H 0.33 6.21 8.99 -39.29 -0.35 5.86 15 28 H 0.32 5.18 9.08 -39.29 -0.36 4.82 15 LS Contribution 245.81 15.07 3.70 3.70 Total: -1.00 -31.16 245.81 -6.04 -37.20 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.46 Total: 8.31 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.37 Total: -2.82 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.11 Total: -63.51 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.16 -6.04 -37.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088883.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.495 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds