Wall clock time and date at job start Mon Mar 30 2020 02:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36884 * 126.39536 * 2 1 4 4 C 1.34675 * 106.81462 * 179.97438 * 3 2 1 5 5 N 1.34121 * 108.02077 * 359.97438 * 4 3 2 6 6 C 1.30497 * 109.25704 * 359.72844 * 5 4 3 7 7 C 1.50703 * 125.64980 * 180.29595 * 6 5 4 8 8 H 1.09005 * 109.47205 * 180.17246 * 7 6 5 9 9 C 1.50695 * 109.47311 * 60.17148 * 7 6 5 10 10 H 1.08000 * 120.00099 * 274.89617 * 9 7 6 11 11 C 1.37879 * 119.99922 * 94.89534 * 9 7 6 12 12 N 1.31510 * 119.99884 * 5.39428 * 11 9 7 13 13 Si 1.86804 * 120.00037 * 185.38866 * 11 9 7 14 14 H 1.48498 * 109.46911 * 60.00012 * 13 11 9 15 15 H 1.48494 * 109.47153 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47286 * 300.00395 * 13 11 9 17 17 C 1.53005 * 109.46895 * 300.17067 * 7 6 5 18 18 N 1.46903 * 109.46937 * 185.31703 * 17 7 6 19 19 H 1.09000 * 109.46799 * 90.02401 * 1 2 3 20 20 H 1.09003 * 109.47232 * 330.03225 * 1 2 3 21 21 H 1.08996 * 109.47227 * 210.02703 * 1 2 3 22 22 H 1.08000 * 126.59355 * 359.96009 * 3 2 1 23 23 H 1.08005 * 125.98554 * 179.97438 * 4 3 2 24 24 H 0.97006 * 119.99819 * 179.97438 * 12 11 9 25 25 H 1.08996 * 109.46932 * 305.31484 * 17 7 6 26 26 H 1.09001 * 109.47020 * 65.31658 * 17 7 6 27 27 H 1.00895 * 110.99861 * 56.04342 * 18 17 7 28 28 H 1.00900 * 110.99599 * 180.02562 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6505 0.0006 5 7 3.5096 -0.6902 0.0015 6 6 2.2664 -1.0869 0.0073 7 6 1.8019 -2.5205 0.0166 8 1 0.7122 -2.5495 0.0169 9 6 2.3230 -3.2095 1.2514 10 1 3.3133 -3.6405 1.2520 11 6 1.5355 -3.2897 2.3803 12 7 0.2929 -2.8602 2.3471 13 14 2.2335 -4.0084 3.9569 14 1 3.4035 -3.2041 4.3920 15 1 1.1933 -3.9813 5.0163 16 1 2.6589 -5.4106 3.7159 17 6 2.3307 -3.2360 -1.2282 18 7 1.7749 -4.5946 -1.2854 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3634 0.8903 0.5133 21 1 -0.3633 -0.8897 0.5142 22 1 1.9612 2.1346 -0.0006 23 1 4.4369 1.2612 0.0003 24 1 -0.2613 -2.9170 3.1413 25 1 2.0322 -2.6835 -2.1191 26 1 3.4184 -3.2900 -1.1817 27 1 0.7664 -4.5738 -1.2642 28 1 2.1097 -5.0883 -2.0992 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088883.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:50 Heat of formation + Delta-G solvation = 34.914075 kcal Electronic energy + Delta-G solvation = -12481.393614 eV Core-core repulsion = 10339.329341 eV Total energy + Delta-G solvation = -2142.064273 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.64900 -36.87870 -34.60807 -34.20897 -31.61785 -28.67188 -27.51527 -26.11559 -23.08318 -21.83759 -20.33171 -18.42396 -17.82202 -16.68695 -16.21564 -16.13130 -15.31792 -15.26263 -14.22356 -14.14831 -13.98422 -13.62377 -13.34392 -13.06536 -12.68079 -12.60983 -12.43528 -11.48190 -11.24026 -10.57091 -10.53063 -10.25847 -9.28561 -8.95273 -8.11090 -6.10561 1.38461 1.42171 1.47423 1.51474 2.26124 2.45354 2.56092 3.22714 3.90798 4.13633 4.16981 4.40294 4.48029 4.50883 4.63080 4.82822 4.90322 4.97510 5.09954 5.54826 5.72604 5.84885 6.18752 6.22435 6.53898 6.64084 6.89876 6.93083 7.49257 7.61217 8.96772 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.029101 B = 0.015326 C = 0.013125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.929065 B = 1826.502922 C = 2132.785431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.466 5.466 3 C -0.082 4.082 4 C -0.067 4.067 5 N -0.544 5.544 6 C 0.234 3.766 7 C 0.111 3.889 8 H 0.059 0.941 9 C -0.473 4.473 10 H 0.037 0.963 11 C 0.022 3.978 12 N -0.915 5.915 13 Si 0.944 3.056 14 H -0.287 1.287 15 H -0.280 1.280 16 H -0.271 1.271 17 C 0.099 3.901 18 N -0.838 5.838 19 H 0.087 0.913 20 H 0.099 0.901 21 H 0.080 0.920 22 H 0.204 0.796 23 H 0.181 0.819 24 H 0.261 0.739 25 H 0.006 0.994 26 H 0.047 0.953 27 H 0.340 0.660 28 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 5.480 -5.611 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.148 5.148 3 C -0.214 4.214 4 C -0.215 4.215 5 N -0.263 5.263 6 C -0.030 4.030 7 C 0.091 3.909 8 H 0.077 0.923 9 C -0.512 4.512 10 H 0.055 0.945 11 C -0.176 4.176 12 N -0.555 5.555 13 Si 0.771 3.229 14 H -0.214 1.214 15 H -0.206 1.206 16 H -0.197 1.197 17 C -0.033 4.033 18 N -0.368 5.368 19 H 0.105 0.895 20 H 0.117 0.883 21 H 0.099 0.901 22 H 0.220 0.780 23 H 0.198 0.802 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.153 0.847 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.669 4.888 -4.819 7.064 hybrid contribution -0.665 0.616 0.205 0.929 sum -2.334 5.504 -4.614 7.552 Atomic orbital electron populations 1.22142 0.75787 1.05360 1.03795 1.45627 1.08546 1.06477 1.54114 1.23065 0.91113 0.93476 1.13781 1.22709 0.97666 0.91363 1.09715 1.70151 1.20447 1.12685 1.23009 1.24619 0.85470 0.92522 1.00396 1.17374 0.97116 0.82411 0.94037 0.92302 1.20792 1.00206 1.33432 0.96809 0.94496 1.25470 0.95180 0.95923 1.01058 1.69877 1.06835 1.49140 1.29628 0.85833 0.77814 0.79089 0.80172 1.21365 1.20557 1.19663 1.21452 0.98505 0.88703 0.94669 1.58337 1.13534 1.17030 1.47908 0.89458 0.88267 0.90099 0.77954 0.80185 0.93020 0.97637 0.93431 0.84733 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.33 10.84 127.77 1.38 3.71 15 2 N -0.47 -18.97 3.15 -537.61 -1.69 -20.66 15 3 C -0.08 -2.92 11.58 83.09 0.96 -1.96 15 4 C -0.07 -2.70 11.87 83.53 0.99 -1.71 15 5 N -0.54 -26.88 11.25 -188.13 -2.12 -29.00 15 6 C 0.23 11.35 6.39 138.13 0.88 12.23 15 7 C 0.11 5.55 2.40 -12.28 -0.03 5.53 15 8 H 0.06 3.03 5.82 -2.38 -0.01 3.02 15 9 C -0.47 -26.71 8.03 25.60 0.21 -26.51 15 10 H 0.04 2.21 7.82 -2.91 -0.02 2.19 15 11 C 0.02 1.24 5.45 84.66 0.46 1.70 15 12 N -0.91 -50.43 12.77 21.45 0.27 -50.15 15 13 Si 0.94 45.56 29.54 68.60 2.03 47.59 15 14 H -0.29 -14.19 7.11 99.48 0.71 -13.48 15 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 16 H -0.27 -12.85 7.11 99.48 0.71 -12.15 15 17 C 0.10 4.31 6.14 86.30 0.53 4.84 15 18 N -0.84 -32.39 9.35 -186.71 -1.75 -34.13 15 19 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 20 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 21 H 0.08 3.18 7.03 -2.39 -0.02 3.17 15 22 H 0.20 5.12 8.06 -2.91 -0.02 5.09 15 23 H 0.18 5.91 8.06 -2.91 -0.02 5.89 15 24 H 0.26 13.84 8.31 -92.70 -0.77 13.07 15 25 H 0.01 0.23 8.14 -2.39 -0.02 0.21 15 26 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.34 12.48 8.99 -89.70 -0.81 11.67 15 28 H 0.34 10.69 9.08 -89.69 -0.81 9.87 15 Total: -1.00 -66.77 245.81 1.68 -65.09 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.45 Total: 23.42 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.39 Total: -2.16 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -5.28 Total: -133.95 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -66.77 1.68 -65.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088883.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.003 kcal (2) G-P(sol) polarization free energy of solvation -66.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds