Wall clock time and date at job start Mon Mar 30 2020 02:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36889 * 126.39514 * 2 1 4 4 C 1.34671 * 106.81492 * 180.24677 * 3 2 1 5 5 N 1.34127 * 108.02093 * 359.74774 * 4 3 2 6 6 C 1.30501 * 109.25930 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.65248 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47083 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.46993 * 300.02705 * 7 6 5 10 10 H 1.07991 * 120.00449 * 359.72131 * 9 7 6 11 11 C 1.37885 * 119.99686 * 179.97438 * 9 7 6 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 7 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 7 14 14 H 1.48493 * 109.47326 * 90.00142 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99892 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99603 * 13 11 9 17 17 C 1.53006 * 109.46561 * 60.02504 * 7 6 5 18 18 N 1.46896 * 109.47066 * 65.00203 * 17 7 6 19 19 H 1.08998 * 109.46863 * 270.18711 * 1 2 3 20 20 H 1.08995 * 109.46874 * 30.18867 * 1 2 3 21 21 H 1.09005 * 109.46632 * 150.18672 * 1 2 3 22 22 H 1.08000 * 126.59329 * 359.97438 * 3 2 1 23 23 H 1.08002 * 125.98820 * 179.75663 * 4 3 2 24 24 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 25 25 H 1.09002 * 109.46686 * 184.99687 * 17 7 6 26 26 H 1.09000 * 109.47280 * 304.99843 * 17 7 6 27 27 H 1.00900 * 110.99907 * 56.04362 * 18 17 7 28 28 H 1.00901 * 111.00006 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5461 0.6506 -0.0056 5 7 3.5096 -0.6902 -0.0032 6 6 2.2664 -1.0870 0.0041 7 6 1.8019 -2.5206 0.0083 8 1 0.7123 -2.5495 0.0139 9 6 2.3166 -3.2190 -1.2239 10 1 2.9160 -2.6777 -1.9408 11 6 2.0180 -4.5479 -1.4385 12 7 1.2885 -5.2073 -0.5652 13 14 2.6496 -5.4115 -2.9697 14 1 3.9777 -6.0126 -2.6868 15 1 1.6965 -6.4800 -3.3639 16 1 2.7764 -4.4287 -4.0756 17 6 2.3373 -3.2263 1.2558 18 7 1.7414 -2.6212 2.4544 19 1 -0.3633 0.0034 1.0277 20 1 -0.3633 0.8883 -0.5167 21 1 -0.3633 -0.8917 -0.5110 22 1 1.9613 2.1346 -0.0004 23 1 4.4368 1.2612 -0.0108 24 1 1.0787 -6.1422 -0.7160 25 1 2.0766 -4.2840 1.2149 26 1 3.4214 -3.1206 1.2960 27 1 0.7338 -2.6490 2.4106 28 1 2.0792 -3.0706 3.2924 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088895.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:53 Heat of formation + Delta-G solvation = 57.052853 kcal Electronic energy + Delta-G solvation = -12449.421865 eV Core-core repulsion = 10308.317602 eV Total energy + Delta-G solvation = -2141.104263 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.07258 -35.08432 -33.12227 -32.16012 -29.87553 -27.05034 -26.14703 -23.88067 -21.48729 -20.32289 -18.47414 -16.43644 -16.31138 -14.81437 -14.64521 -14.42269 -13.81710 -13.39966 -12.70557 -12.34535 -12.22225 -12.07297 -11.89579 -11.20696 -10.96542 -10.74221 -10.04436 -9.91049 -9.30350 -8.86963 -8.68059 -8.50900 -7.62419 -7.31362 -6.08791 -4.14167 2.99740 3.30020 3.36129 3.41270 3.68426 4.21951 4.43749 5.19223 5.28481 5.58427 5.64751 5.70072 5.78987 5.91063 6.22990 6.44124 6.78192 6.94102 7.20779 7.42598 7.56419 7.78485 7.90633 7.96093 8.24720 8.32810 8.42165 8.89867 9.24769 9.49924 10.95716 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.037862 B = 0.012823 C = 0.011553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.344155 B = 2182.997659 C = 2422.982643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.467 5.467 3 C -0.100 4.100 4 C -0.035 4.035 5 N -0.501 5.501 6 C 0.285 3.715 7 C 0.129 3.871 8 H 0.035 0.965 9 C -0.497 4.497 10 H 0.063 0.937 11 C 0.060 3.940 12 N -0.896 5.896 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.068 3.932 18 N -0.858 5.858 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.157 0.843 23 H 0.154 0.846 24 H 0.262 0.738 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.324 0.676 28 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 6.796 2.102 7.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.150 5.150 3 C -0.232 4.232 4 C -0.184 4.184 5 N -0.218 5.218 6 C 0.022 3.978 7 C 0.109 3.891 8 H 0.053 0.947 9 C -0.537 4.537 10 H 0.082 0.918 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.728 3.272 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.063 4.063 18 N -0.385 5.385 19 H 0.086 0.914 20 H 0.090 0.910 21 H 0.107 0.893 22 H 0.175 0.825 23 H 0.171 0.829 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.264 6.809 1.862 7.413 hybrid contribution -0.827 -0.692 -0.586 1.228 sum -3.091 6.116 1.276 6.971 Atomic orbital electron populations 1.21858 0.78146 1.03808 1.02668 1.45338 1.06893 1.06901 1.55858 1.22289 0.91869 0.91945 1.17111 1.22137 0.95555 0.92310 1.08375 1.70265 1.19484 1.10254 1.21823 1.24165 0.84742 0.91396 0.97498 1.17379 0.95707 0.81168 0.94876 0.94697 1.21016 1.32499 0.95335 1.04824 0.91843 1.24956 0.94892 0.97226 0.96981 1.69858 1.38242 1.10085 1.35301 0.86437 0.78690 0.79084 0.82946 1.20425 1.21264 1.19841 1.21992 0.98060 0.98985 0.87247 1.59042 1.10937 1.63259 1.05239 0.91373 0.90964 0.89329 0.82532 0.82853 0.92824 0.91109 0.92566 0.86588 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 10.83 59.85 0.65 1.86 15 2 N -0.47 -9.37 3.15 -121.28 -0.38 -9.75 15 3 C -0.10 -1.86 11.58 -16.56 -0.19 -2.05 15 4 C -0.04 -0.72 11.87 -17.81 -0.21 -0.93 15 5 N -0.50 -12.38 11.25 -10.82 -0.12 -12.50 15 6 C 0.29 6.81 6.08 -155.41 -0.94 5.87 15 7 C 0.13 3.26 2.24 -92.92 -0.21 3.05 15 8 H 0.04 0.89 6.73 -51.93 -0.35 0.54 15 9 C -0.50 -13.81 8.55 -34.44 -0.29 -14.10 15 10 H 0.06 1.85 7.74 -52.49 -0.41 1.44 15 11 C 0.06 1.64 5.30 -17.82 -0.09 1.54 15 12 N -0.90 -24.51 11.28 55.43 0.63 -23.88 15 13 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 15 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 15 H -0.29 -6.66 7.11 56.52 0.40 -6.25 15 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 17 C 0.07 1.64 6.00 -3.82 -0.02 1.62 15 18 N -0.86 -17.39 9.34 -10.37 -0.10 -17.49 15 19 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.09 1.43 7.05 -51.93 -0.37 1.06 15 22 H 0.16 2.23 8.06 -52.49 -0.42 1.81 15 23 H 0.15 2.64 8.06 -52.49 -0.42 2.21 15 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 25 H 0.07 1.85 5.94 -51.93 -0.31 1.54 15 26 H 0.06 1.47 8.14 -51.93 -0.42 1.04 15 27 H 0.32 6.15 8.99 -39.29 -0.35 5.80 15 28 H 0.32 5.78 9.08 -39.29 -0.36 5.43 15 LS Contribution 242.70 15.07 3.66 3.66 Total: -1.00 -30.92 242.70 -6.05 -36.96 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.39 Total: 9.83 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.32 Total: -3.15 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.02 Total: -63.62 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.92 -6.05 -36.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088895.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.017 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds