Wall clock time and date at job start Mon Mar 30 2020 03:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48498 * 109.47319 * 240.00823 * 3 2 1 5 5 H 1.48501 * 109.46737 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47318 * 120.00368 * 3 2 1 7 7 C 1.40311 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00346 * 179.97438 * 7 2 1 9 9 C 1.40077 * 119.99586 * 0.26892 * 7 2 1 10 10 C 1.35035 * 119.99952 * 174.97650 * 9 7 2 11 11 C 1.50700 * 119.99856 * 6.21270 * 10 9 7 12 12 N 1.46905 * 109.47021 * 126.08840 * 11 10 9 13 13 C 1.46843 * 111.00262 * 294.21182 * 12 11 10 14 14 C 1.53032 * 109.52399 * 174.16025 * 13 12 11 15 15 C 1.53120 * 109.27905 * 59.18028 * 14 13 12 16 16 C 1.53121 * 109.15943 * 302.34267 * 15 14 13 17 17 C 1.46845 * 110.99672 * 169.99766 * 12 11 10 18 18 H 0.97000 * 120.00380 * 359.97438 * 1 2 3 19 19 H 1.08002 * 120.00026 * 354.97979 * 9 7 2 20 20 H 1.07997 * 120.00307 * 186.21347 * 10 9 7 21 21 H 1.09000 * 109.47121 * 246.09192 * 11 10 9 22 22 H 1.09001 * 109.47323 * 6.09176 * 11 10 9 23 23 H 1.09007 * 109.45848 * 294.17675 * 13 12 11 24 24 H 1.08995 * 109.46421 * 54.14334 * 13 12 11 25 25 H 1.08996 * 109.50495 * 299.23655 * 14 13 12 26 26 H 1.09000 * 109.50470 * 179.11694 * 14 13 12 27 27 H 1.08998 * 109.52483 * 182.44246 * 15 14 13 28 28 H 1.08994 * 109.52337 * 62.25007 * 15 14 13 29 29 H 1.09005 * 109.50751 * 297.71881 * 16 15 14 30 30 H 1.08997 * 109.50459 * 177.59411 * 16 15 14 31 31 H 1.08993 * 109.46870 * 305.85953 * 17 12 11 32 32 H 1.09005 * 109.46439 * 65.83206 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0945 1.6965 -1.2126 5 1 1.2758 2.7464 0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0085 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0010 9 6 1.3081 -2.4282 -0.0068 10 6 1.9798 -3.5951 -0.1097 11 6 3.4865 -3.6026 -0.0769 12 7 3.9489 -4.5293 0.9651 13 6 3.5674 -4.0524 2.3005 14 6 3.9351 -5.1087 3.3450 15 6 5.4422 -5.3727 3.2882 16 6 5.8208 -5.8216 1.8741 17 6 5.3985 -4.7446 0.8721 18 1 -0.4851 0.8400 0.0004 19 1 0.2309 -2.4302 0.0707 20 1 1.4374 -4.5229 -0.2156 21 1 3.8694 -3.9244 -1.0453 22 1 3.8502 -2.5987 0.1423 23 1 4.0967 -3.1251 2.5198 24 1 2.4928 -3.8725 2.3287 25 1 3.3956 -6.0321 3.1343 26 1 3.6661 -4.7478 4.3378 27 1 5.7020 -6.1557 4.0006 28 1 5.9818 -4.4590 3.5370 29 1 5.3110 -6.7562 1.6401 30 1 6.8991 -5.9701 1.8158 31 1 5.6538 -5.0674 -0.1372 32 1 5.9192 -3.8141 1.0982 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260112107.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:49 Heat of formation + Delta-G solvation = -7.058262 kcal Electronic energy + Delta-G solvation = -12341.936790 eV Core-core repulsion = 10301.592804 eV Total energy + Delta-G solvation = -2040.343986 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.29795 -34.64758 -33.02983 -30.77299 -30.21592 -26.20666 -24.23629 -22.49017 -21.85245 -19.21069 -18.61459 -16.33226 -15.18872 -14.83740 -14.37228 -14.02549 -13.59788 -13.26090 -12.89553 -12.48831 -12.16711 -11.73431 -11.46870 -11.28024 -10.79450 -10.75775 -10.48686 -10.34100 -9.97850 -9.91074 -9.61749 -9.42770 -9.03816 -7.58241 -7.32775 -6.70968 -4.21781 2.98640 3.08745 3.12591 3.89069 4.00039 4.77945 5.19267 5.24335 5.29885 5.52612 5.68465 5.86830 5.95223 6.01865 6.15038 6.22154 6.27404 6.35820 6.48417 6.61785 6.67009 6.80105 6.92401 7.16201 7.28133 7.60806 7.80888 8.02148 8.11079 8.49830 8.72557 9.16348 9.32308 10.32826 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.048810 B = 0.008459 C = 0.008172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.518409 B = 3309.396389 C = 3425.635686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.073 3.927 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.465 4.465 8 H 0.073 0.927 9 C 0.052 3.948 10 C -0.410 4.410 11 C 0.130 3.870 12 N -0.538 5.538 13 C 0.065 3.935 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.114 4.114 17 C 0.052 3.948 18 H 0.280 0.720 19 H 0.079 0.921 20 H 0.069 0.931 21 H 0.037 0.963 22 H 0.034 0.966 23 H 0.021 0.979 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 -4.549 4.342 10.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.496 4.496 8 H 0.091 0.909 9 C 0.031 3.969 10 C -0.432 4.432 11 C 0.005 3.995 12 N -0.263 5.263 13 C -0.063 4.063 14 C -0.155 4.155 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.076 4.076 18 H 0.091 0.909 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.039 0.961 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 7.543 -4.826 4.255 9.915 hybrid contribution 0.701 1.618 0.118 1.767 sum 8.245 -3.208 4.373 9.869 Atomic orbital electron populations 1.69561 1.07636 1.29396 1.38424 1.26101 0.94754 1.01571 0.91829 0.86387 0.80030 0.80475 0.79864 1.18981 1.20410 1.19082 1.19665 0.94644 0.90822 1.44450 0.90886 1.19898 0.96559 0.92072 0.88412 1.21778 0.92166 0.95846 1.33452 1.20585 0.95921 0.92105 0.90936 1.62094 1.10747 1.49487 1.03986 1.21891 1.01915 0.94348 0.88142 1.21619 0.95443 1.00173 0.98271 1.21565 0.96939 1.00424 0.96753 1.21567 0.99461 0.99318 0.94857 1.22031 0.90020 0.96832 0.98728 0.90947 0.90291 0.91307 0.94451 0.94803 0.96060 0.89752 0.91574 0.92378 0.92645 0.92719 0.91497 0.92544 0.91685 0.96039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.26 12.87 55.57 0.72 -21.54 16 2 C 0.07 1.93 5.50 -17.26 -0.09 1.83 16 3 Si 0.91 19.57 29.56 -169.99 -5.03 14.55 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.47 -12.79 8.64 -38.11 -0.33 -13.12 16 8 H 0.07 1.97 5.51 -52.49 -0.29 1.68 16 9 C 0.05 1.42 9.38 -40.03 -0.38 1.05 16 10 C -0.41 -10.53 8.68 -35.45 -0.31 -10.84 16 11 C 0.13 3.00 5.20 -4.97 -0.03 2.97 16 12 N -0.54 -10.92 4.65 -236.11 -1.10 -12.01 16 13 C 0.07 1.27 5.31 -3.84 -0.02 1.25 16 14 C -0.12 -1.83 6.09 -26.65 -0.16 -1.99 16 15 C -0.12 -1.64 6.00 -26.61 -0.16 -1.80 16 16 C -0.11 -1.61 6.09 -26.65 -0.16 -1.77 16 17 C 0.05 0.89 5.46 -3.83 -0.02 0.87 16 18 H 0.28 6.91 8.29 -40.82 -0.34 6.57 16 19 H 0.08 2.28 7.43 -52.49 -0.39 1.89 16 20 H 0.07 1.78 8.06 -52.49 -0.42 1.36 16 21 H 0.04 0.84 7.99 -51.93 -0.41 0.42 16 22 H 0.03 0.83 5.36 -51.93 -0.28 0.55 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 1.84 7.10 -51.93 -0.37 1.47 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -27.43 257.66 -8.28 -35.71 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.10 Total: 0.96 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.66 Total: -21.55 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: -0.38 Total: -33.55 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.43 -8.28 -35.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112107.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.653 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds