Wall clock time and date at job start Mon Mar 30 2020 03:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86799 * 119.99797 * 2 1 4 4 H 1.48493 * 109.47352 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47244 * 300.00151 * 3 2 1 6 6 H 1.48507 * 109.47051 * 59.99792 * 3 2 1 7 7 C 1.40309 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99422 * 179.97438 * 7 2 1 9 9 C 1.40065 * 120.00312 * 0.02562 * 7 2 1 10 10 C 1.35030 * 120.00299 * 188.87643 * 9 7 2 11 11 C 1.50698 * 119.99929 * 6.37343 * 10 9 7 12 12 C 1.53001 * 109.47276 * 126.28212 * 11 10 9 13 13 H 1.09001 * 109.45888 * 54.98080 * 12 11 10 14 14 C 1.53042 * 109.45577 * 174.88984 * 12 11 10 15 15 C 1.53114 * 109.27613 * 179.12724 * 14 12 11 16 16 C 1.53125 * 109.21416 * 302.44329 * 15 14 12 17 17 C 1.53033 * 109.27765 * 57.62081 * 16 15 14 18 18 N 1.46844 * 109.52472 * 300.82113 * 17 16 15 19 19 H 0.96989 * 120.00097 * 359.97438 * 1 2 3 20 20 H 1.08003 * 120.00106 * 8.87947 * 9 7 2 21 21 H 1.08001 * 120.00311 * 186.37648 * 10 9 7 22 22 H 1.09006 * 109.47130 * 6.28392 * 11 10 9 23 23 H 1.09004 * 109.47548 * 246.28415 * 11 10 9 24 24 H 1.09002 * 109.45193 * 59.22029 * 14 12 11 25 25 H 1.08999 * 109.55470 * 299.10268 * 14 12 11 26 26 H 1.09004 * 109.52457 * 182.50375 * 15 14 12 27 27 H 1.09004 * 109.52700 * 62.37706 * 15 14 12 28 28 H 1.08998 * 109.50516 * 177.56424 * 16 15 14 29 29 H 1.09001 * 109.49775 * 297.67636 * 16 15 14 30 30 H 1.08993 * 109.46710 * 60.84133 * 17 16 15 31 31 H 1.09005 * 109.45767 * 180.81059 * 17 16 15 32 32 H 1.00897 * 111.00402 * 185.84207 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7008 1.3465 -0.0006 5 1 1.8821 2.3965 -1.2125 6 1 1.8821 2.3965 1.2125 7 6 2.0085 -1.2151 -0.0005 8 1 3.0885 -1.2150 -0.0010 9 6 1.3083 -2.4281 -0.0016 10 6 1.9713 -3.5906 0.1783 11 6 3.4383 -3.5759 0.5228 12 6 3.6730 -4.4008 1.7898 13 1 3.2690 -5.4036 1.6502 14 6 5.1752 -4.4919 2.0678 15 6 5.4042 -5.2996 3.3482 16 6 4.6540 -4.6337 4.5051 17 6 3.1671 -4.5399 4.1556 18 7 3.0007 -3.7561 2.9250 19 1 -0.4850 0.8399 0.0004 20 1 0.2380 -2.4337 -0.1464 21 1 1.4502 -4.5310 0.0753 22 1 3.7612 -2.5488 0.6930 23 1 4.0093 -4.0046 -0.3009 24 1 5.5827 -3.4886 2.1926 25 1 5.6716 -4.9855 1.2323 26 1 6.4701 -5.3294 3.5744 27 1 5.0328 -6.3150 3.2098 28 1 4.7783 -5.2287 5.4099 29 1 5.0532 -3.6328 4.6694 30 1 2.7654 -5.5419 4.0050 31 1 2.6323 -4.0532 4.9713 32 1 2.0242 -3.5993 2.7254 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260136416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:58 Heat of formation + Delta-G solvation = -33.701682 kcal Electronic energy + Delta-G solvation = -12331.650212 eV Core-core repulsion = 10290.150880 eV Total energy + Delta-G solvation = -2041.499332 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60974 -36.50476 -34.44328 -32.67395 -31.88447 -28.14770 -26.11344 -24.18744 -22.52055 -20.71506 -20.34512 -18.20535 -17.15311 -16.58411 -15.95910 -15.25191 -15.04589 -14.72385 -14.35785 -13.94236 -13.81083 -13.21303 -13.08724 -12.82375 -12.53730 -12.27576 -11.95665 -11.76439 -11.60154 -11.37462 -11.19821 -10.99064 -10.76110 -9.56909 -9.14802 -8.65141 -6.25224 1.24940 1.38438 1.54065 1.98500 2.24418 3.41361 3.45988 4.00138 4.07358 4.12482 4.34602 4.54226 4.63877 4.68040 4.82749 4.97000 4.99250 5.07314 5.13166 5.21261 5.24990 5.26441 5.31621 5.40167 5.51521 5.73774 5.96112 6.40232 6.44727 6.61905 6.71208 7.11990 7.27225 8.41231 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.044482 B = 0.008763 C = 0.008431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.314152 B = 3194.617277 C = 3320.216002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.026 3.974 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.479 4.479 8 H 0.075 0.925 9 C 0.029 3.971 10 C -0.414 4.414 11 C -0.033 4.033 12 C 0.103 3.897 13 H 0.015 0.985 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.113 4.113 17 C 0.053 3.947 18 N -0.692 5.692 19 H 0.288 0.712 20 H 0.049 0.951 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.034 0.966 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.022 0.978 31 H 0.074 0.926 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.336 -4.815 6.783 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.186 4.186 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.509 4.509 8 H 0.093 0.907 9 C 0.009 3.991 10 C -0.436 4.436 11 C -0.070 4.070 12 C -0.007 4.007 13 H 0.033 0.967 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.077 4.077 18 N -0.325 5.325 19 H 0.098 0.902 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.040 0.960 31 H 0.092 0.908 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.650 -4.257 6.917 11.866 hybrid contribution -1.011 -0.132 -0.454 1.116 sum 7.639 -4.389 6.463 10.927 Atomic orbital electron populations 1.69647 1.09175 1.30699 1.39121 1.27020 0.95578 1.05169 0.90838 0.85150 0.79357 0.76259 0.78877 1.18226 1.18853 1.19052 1.19832 0.94795 0.91389 1.44912 0.90726 1.19848 0.94960 0.93638 0.90632 1.22071 0.96920 0.94186 1.30433 1.20028 0.94125 0.98886 0.94000 1.21378 0.94424 0.94086 0.90806 0.96732 1.21648 0.94421 1.00563 0.98360 1.21566 1.00903 0.98481 0.94357 1.21581 0.93904 1.01204 0.98343 1.22018 0.97936 0.95188 0.92514 1.60277 1.19246 1.49546 1.03414 0.90225 0.93307 0.92571 0.93025 0.94748 0.92417 0.91220 0.90219 0.92228 0.89702 0.92084 0.95968 0.90762 0.84220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.38 12.89 21.89 0.28 -47.10 16 2 C 0.03 1.40 5.50 85.37 0.47 1.87 16 3 Si 0.98 40.49 29.56 68.60 2.03 42.52 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.48 -26.99 8.48 23.22 0.20 -26.79 16 8 H 0.07 4.15 5.77 -2.91 -0.02 4.13 16 9 C 0.03 1.68 9.37 21.97 0.21 1.88 16 10 C -0.41 -21.28 8.68 24.95 0.22 -21.06 16 11 C -0.03 -1.49 5.09 29.85 0.15 -1.34 16 12 C 0.10 3.91 2.49 44.94 0.11 4.02 16 13 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 14 C -0.11 -3.47 5.38 30.65 0.16 -3.30 16 15 C -0.12 -2.86 6.00 30.67 0.18 -2.68 16 16 C -0.11 -2.82 6.10 30.65 0.19 -2.63 16 17 C 0.05 1.58 6.55 86.32 0.57 2.15 16 18 N -0.69 -26.61 6.50 -491.68 -3.20 -29.81 16 19 H 0.29 14.28 8.29 -92.72 -0.77 13.51 16 20 H 0.05 2.96 7.46 -2.91 -0.02 2.93 16 21 H 0.06 2.85 8.06 -2.91 -0.02 2.82 16 22 H 0.05 2.54 5.51 -2.38 -0.01 2.52 16 23 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.34 14.54 7.84 -89.70 -0.70 13.83 16 Total: -1.00 -58.85 258.26 1.95 -56.90 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.38 Total: 25.36 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 2.45 Total: -47.88 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.92 Total: -76.91 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -58.85 1.95 -56.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260136416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.203 kcal (2) G-P(sol) polarization free energy of solvation -58.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds