Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47180 * 120.00227 * 2 1 3 5 5 N 1.30262 * 125.87391 * 300.16561 * 4 2 1 6 6 N 1.39853 * 109.54334 * 180.30627 * 5 4 2 7 7 H 0.96995 * 125.70484 * 179.73212 * 6 5 4 8 8 C 1.35157 * 108.59309 * 359.71680 * 6 5 4 9 9 N 1.37735 * 126.55681 * 180.02562 * 8 6 5 10 10 C 1.40550 * 106.87991 * 359.97438 * 8 6 5 11 11 C 1.41186 * 126.63668 * 180.02562 * 10 8 6 12 12 H 1.07997 * 119.99966 * 147.06907 * 11 10 8 13 13 C 1.39556 * 120.00156 * 327.06505 * 11 10 8 14 14 N 1.31194 * 119.99861 * 335.35313 * 13 11 10 15 15 Si 1.86800 * 120.00251 * 155.34645 * 13 11 10 16 16 H 1.48494 * 109.47165 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47157 * 300.00278 * 15 13 11 18 18 H 1.48497 * 109.46920 * 60.00291 * 15 13 11 19 19 H 1.08996 * 109.47500 * 299.99891 * 1 2 3 20 20 H 1.08998 * 109.47262 * 60.00316 * 1 2 3 21 21 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47335 * 240.00542 * 2 1 3 23 23 H 1.09002 * 109.47311 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47091 * 300.00412 * 3 2 1 25 25 H 1.09002 * 109.46558 * 60.00066 * 3 2 1 26 26 H 0.97002 * 119.99646 * 172.53755 * 9 8 6 27 27 H 0.96996 * 120.00136 * 352.52640 * 9 8 6 28 28 H 0.97002 * 120.00343 * 354.12197 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7867 -0.3684 2.4631 6 7 2.4261 -1.2585 3.3318 7 1 2.4025 -1.2193 4.3007 8 6 3.0822 -2.1828 2.5956 9 7 3.8330 -3.2325 3.0766 10 6 2.8507 -1.8685 1.2454 11 6 3.3428 -2.5669 0.1215 12 1 2.7525 -2.6218 -0.7812 13 6 4.5921 -3.1864 0.1769 14 7 5.5015 -2.7548 1.0182 15 14 4.9695 -4.6301 -0.9468 16 1 6.3533 -5.1058 -0.6937 17 1 4.0107 -5.7315 -0.6767 18 1 4.8444 -4.2011 -2.3629 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 4.1753 -3.9039 2.4659 27 1 4.0197 -3.3003 4.0261 28 1 5.3380 -1.9539 1.5406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = 49.901965 kcal Electronic energy + Delta-G solvation = -12499.068196 eV Core-core repulsion = 10357.653847 eV Total energy + Delta-G solvation = -2141.414349 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.50477 -34.91246 -33.79791 -32.06771 -29.09026 -27.40547 -26.46134 -23.89299 -22.12699 -19.66938 -17.99208 -17.39187 -16.35248 -14.80304 -14.04007 -13.70460 -13.67961 -13.59310 -12.74264 -12.53344 -12.19783 -11.56467 -11.28281 -10.86210 -10.52928 -10.48840 -10.20707 -10.12544 -9.53348 -9.45531 -9.13086 -8.37196 -7.67099 -6.66064 -6.19617 -3.70253 3.33690 3.39381 3.47657 3.57663 4.04049 4.32622 4.42309 5.25411 5.43060 5.71714 5.76417 5.99310 6.21985 6.36105 6.43009 6.47346 6.59797 6.85751 6.96709 7.17893 7.32423 7.79285 8.12735 8.45610 8.49082 8.81647 9.01040 9.26720 9.42379 9.54373 10.74160 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.014764 C = 0.011684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.621507 B = 1895.990231 C = 2395.943846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 C -0.134 4.134 4 C 0.054 3.946 5 N -0.343 5.343 6 N -0.514 5.514 7 H 0.413 0.587 8 C 0.246 3.754 9 N -0.846 5.846 10 C -0.095 4.095 11 C -0.517 4.517 12 H 0.058 0.942 13 C 0.020 3.980 14 N -0.856 5.856 15 Si 1.054 2.946 16 H -0.283 1.283 17 H -0.285 1.285 18 H -0.284 1.284 19 H 0.052 0.948 20 H 0.046 0.954 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.416 0.584 27 H 0.372 0.628 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 1.008 0.577 3.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.022 4.022 3 C -0.192 4.192 4 C -0.110 4.110 5 N -0.170 5.170 6 N -0.229 5.229 7 H 0.253 0.747 8 C 0.021 3.979 9 N -0.398 5.398 10 C -0.110 4.110 11 C -0.553 4.553 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.488 5.488 15 Si 0.881 3.119 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.211 1.211 19 H 0.071 0.929 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.102 0.898 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.250 0.750 27 H 0.197 0.803 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.272 0.745 0.823 3.455 hybrid contribution -0.392 0.241 0.693 0.832 sum -3.664 0.986 1.516 4.086 Atomic orbital electron populations 1.21766 0.95704 1.01264 1.00623 1.19288 0.94151 0.94427 0.94354 1.21737 1.01094 0.95873 1.00516 1.21927 1.01351 0.95685 0.92026 1.76388 1.23770 1.16249 1.00634 1.45340 1.45106 1.25565 1.06920 0.74737 1.18490 0.98340 0.90110 0.90935 1.41127 1.61116 1.28458 1.09122 1.17196 1.06528 0.97363 0.89900 1.19124 1.03566 1.33652 0.98913 0.92415 1.26301 0.92193 1.01571 0.99027 1.70566 1.33257 1.22619 1.22308 0.83789 0.76106 0.76026 0.75978 1.20823 1.21156 1.21059 0.92876 0.93478 0.93094 0.89785 0.92935 0.93498 0.92940 0.74970 0.80297 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.18 37.16 0.34 -2.07 15 2 C 0.00 -0.04 3.30 -91.77 -0.30 -0.34 15 3 C -0.13 -2.47 9.18 37.16 0.34 -2.12 15 4 C 0.05 1.33 5.77 -81.89 -0.47 0.85 15 5 N -0.34 -8.17 12.58 33.97 0.43 -7.75 15 6 N -0.51 -11.47 7.32 31.66 0.23 -11.24 15 7 H 0.41 7.60 8.96 -182.79 -1.64 5.97 15 8 C 0.25 6.00 7.44 -153.29 -1.14 4.86 15 9 N -0.85 -18.36 8.01 31.65 0.25 -18.10 15 10 C -0.09 -2.54 5.23 -106.54 -0.56 -3.10 15 11 C -0.52 -14.26 8.72 -37.97 -0.33 -14.59 15 12 H 0.06 1.59 7.64 -52.49 -0.40 1.19 15 13 C 0.02 0.54 4.10 -17.33 -0.07 0.47 15 14 N -0.86 -23.55 11.76 55.53 0.65 -22.90 15 15 Si 1.05 23.11 29.99 -169.99 -5.10 18.01 15 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 17 H -0.29 -6.04 7.11 56.52 0.40 -5.64 15 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 19 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.08 1.81 7.33 -51.93 -0.38 1.43 15 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 25 H 0.05 0.96 8.14 -51.93 -0.42 0.53 15 26 H 0.42 9.63 6.56 -40.82 -0.27 9.36 15 27 H 0.37 6.67 8.95 -40.82 -0.37 6.31 15 28 H 0.28 8.22 6.93 -40.82 -0.28 7.93 15 LS Contribution 239.12 15.07 3.60 3.60 Total: -1.00 -29.82 239.12 -6.79 -36.61 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.19 Total: -16.04 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 1.57 Total: -59.99 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.10 Total: 18.01 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.82 -6.79 -36.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.516 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds