Wall clock time and date at job start Mon Mar 30 2020 01:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47180 * 120.00227 * 2 1 3 5 5 N 1.30262 * 125.87391 * 300.16561 * 4 2 1 6 6 N 1.39853 * 109.54334 * 180.30627 * 5 4 2 7 7 H 0.96995 * 125.70484 * 179.73212 * 6 5 4 8 8 C 1.35157 * 108.59309 * 359.71680 * 6 5 4 9 9 N 1.37735 * 126.55681 * 180.02562 * 8 6 5 10 10 C 1.40550 * 106.87991 * 359.97438 * 8 6 5 11 11 C 1.41186 * 126.63668 * 180.02562 * 10 8 6 12 12 H 1.07997 * 119.99966 * 147.06907 * 11 10 8 13 13 C 1.39556 * 120.00156 * 327.06505 * 11 10 8 14 14 N 1.31194 * 119.99861 * 335.35313 * 13 11 10 15 15 Si 1.86800 * 120.00251 * 155.34645 * 13 11 10 16 16 H 1.48494 * 109.47165 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47157 * 300.00278 * 15 13 11 18 18 H 1.48497 * 109.46920 * 60.00291 * 15 13 11 19 19 H 1.08996 * 109.47500 * 299.99891 * 1 2 3 20 20 H 1.08998 * 109.47262 * 60.00316 * 1 2 3 21 21 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47335 * 240.00542 * 2 1 3 23 23 H 1.09002 * 109.47311 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47091 * 300.00412 * 3 2 1 25 25 H 1.09002 * 109.46558 * 60.00066 * 3 2 1 26 26 H 0.97002 * 119.99646 * 172.53755 * 9 8 6 27 27 H 0.96996 * 120.00136 * 352.52640 * 9 8 6 28 28 H 0.97002 * 120.00343 * 354.12197 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7867 -0.3684 2.4631 6 7 2.4261 -1.2585 3.3318 7 1 2.4025 -1.2193 4.3007 8 6 3.0822 -2.1828 2.5956 9 7 3.8330 -3.2325 3.0766 10 6 2.8507 -1.8685 1.2454 11 6 3.3428 -2.5669 0.1215 12 1 2.7525 -2.6218 -0.7812 13 6 4.5921 -3.1864 0.1769 14 7 5.5015 -2.7548 1.0182 15 14 4.9695 -4.6301 -0.9468 16 1 6.3533 -5.1058 -0.6937 17 1 4.0107 -5.7315 -0.6767 18 1 4.8444 -4.2011 -2.3629 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 4.1753 -3.9039 2.4659 27 1 4.0197 -3.3003 4.0261 28 1 5.3380 -1.9539 1.5406 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190543.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:25 Heat of formation + Delta-G solvation = 29.792883 kcal Electronic energy + Delta-G solvation = -12499.940191 eV Core-core repulsion = 10357.653847 eV Total energy + Delta-G solvation = -2142.286344 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.37852 -36.59053 -35.70615 -33.91782 -30.96377 -29.31807 -27.90759 -25.88983 -23.80815 -21.59541 -19.75598 -19.29375 -18.25021 -16.63341 -15.83408 -15.47498 -15.39172 -15.29468 -14.47036 -14.39870 -13.77899 -13.20249 -12.94889 -12.61218 -12.14374 -12.06927 -11.89756 -11.74300 -11.37680 -11.33347 -11.02031 -10.33604 -9.53517 -8.72687 -8.14173 -5.76388 1.56546 1.62018 1.63116 1.87863 2.25858 2.39021 2.59415 3.41019 3.55176 4.14562 4.18033 4.44874 4.70411 4.81796 4.87553 5.02876 5.12325 5.15310 5.38459 5.48399 5.58893 5.92120 6.23710 6.35594 6.48689 6.96172 7.09622 7.39468 7.47358 7.62358 8.63443 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.035008 B = 0.014764 C = 0.011684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.621507 B = 1895.990231 C = 2395.943846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.009 4.009 3 C -0.125 4.125 4 C 0.047 3.953 5 N -0.348 5.348 6 N -0.505 5.505 7 H 0.431 0.569 8 C 0.254 3.746 9 N -0.836 5.836 10 C -0.151 4.151 11 C -0.539 4.539 12 H 0.044 0.956 13 C -0.015 4.015 14 N -0.868 5.868 15 Si 1.106 2.894 16 H -0.281 1.281 17 H -0.272 1.272 18 H -0.276 1.276 19 H 0.052 0.948 20 H 0.081 0.919 21 H 0.038 0.962 22 H 0.068 0.932 23 H 0.031 0.969 24 H 0.082 0.918 25 H 0.052 0.948 26 H 0.411 0.589 27 H 0.391 0.609 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 0.967 0.417 4.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.029 4.029 3 C -0.183 4.183 4 C -0.117 4.117 5 N -0.176 5.176 6 N -0.223 5.223 7 H 0.274 0.726 8 C 0.028 3.972 9 N -0.388 5.388 10 C -0.166 4.166 11 C -0.575 4.575 12 H 0.062 0.938 13 C -0.221 4.221 14 N -0.500 5.500 15 Si 0.928 3.072 16 H -0.206 1.206 17 H -0.198 1.198 18 H -0.202 1.202 19 H 0.071 0.929 20 H 0.100 0.900 21 H 0.058 0.942 22 H 0.086 0.914 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.244 0.756 27 H 0.219 0.781 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.820 0.718 0.718 3.953 hybrid contribution -0.271 0.296 0.822 0.915 sum -4.091 1.013 1.540 4.488 Atomic orbital electron populations 1.21673 0.93242 1.01064 1.02305 1.19444 0.96209 0.95216 0.92078 1.21657 0.99735 0.94582 1.02296 1.22505 1.00549 0.95305 0.93365 1.76336 1.24118 1.16553 1.00553 1.45335 1.44389 1.24737 1.07808 0.72618 1.18611 0.97485 0.90194 0.90945 1.41048 1.60209 1.27363 1.10191 1.17607 1.08920 0.99129 0.90940 1.19247 1.04032 1.35166 0.99049 0.93760 1.27523 0.91688 1.03235 0.99660 1.70716 1.33531 1.22246 1.23495 0.83082 0.76109 0.73399 0.74588 1.20636 1.19776 1.20165 0.92865 0.90043 0.94242 0.91402 0.94952 0.89963 0.92846 0.75587 0.78059 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.18 71.98 0.66 -3.57 15 2 C -0.01 -0.36 3.30 -11.54 -0.04 -0.40 15 3 C -0.12 -4.41 9.18 71.98 0.66 -3.75 15 4 C 0.05 2.30 5.77 43.67 0.25 2.55 15 5 N -0.35 -16.35 12.58 -46.43 -0.58 -16.93 15 6 N -0.51 -22.07 7.32 -53.75 -0.39 -22.46 15 7 H 0.43 15.17 8.96 -213.49 -1.91 13.26 15 8 C 0.25 12.33 7.44 133.00 0.99 13.32 15 9 N -0.84 -35.65 8.01 -53.76 -0.43 -36.08 15 10 C -0.15 -8.16 5.23 -21.11 -0.11 -8.27 15 11 C -0.54 -30.19 8.72 23.31 0.20 -29.99 15 12 H 0.04 2.50 7.64 -2.91 -0.02 2.48 15 13 C -0.01 -0.79 4.10 85.11 0.35 -0.44 15 14 N -0.87 -47.98 11.76 21.77 0.26 -47.72 15 15 Si 1.11 46.40 29.99 68.60 2.06 48.45 15 16 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 17 H -0.27 -10.77 7.11 99.48 0.71 -10.07 15 18 H -0.28 -11.12 7.11 99.48 0.71 -10.42 15 19 H 0.05 1.78 8.14 -2.39 -0.02 1.77 15 20 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 22 H 0.07 2.96 7.33 -2.39 -0.02 2.94 15 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.08 2.30 8.14 -2.39 -0.02 2.28 15 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.41 18.84 6.56 -92.71 -0.61 18.23 15 27 H 0.39 13.48 8.95 -92.71 -0.83 12.65 15 28 H 0.26 15.50 6.93 -92.71 -0.64 14.86 15 Total: -1.00 -63.50 239.12 1.84 -61.66 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -2.03 Total: 43.64 kcal Atomic # 6 Polarization: -33.52 SS G_CDS: 2.97 Total: -30.55 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -1.15 Total: -123.20 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.06 Total: 48.45 kcal Total: -63.50 1.84 -61.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190543.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.453 kcal (2) G-P(sol) polarization free energy of solvation -63.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds