Wall clock time and date at job start Mon Mar 30 2020 02:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00529 * 2 1 4 4 H 1.48500 * 109.47558 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46830 * 299.99891 * 3 2 1 6 6 H 1.48499 * 109.47006 * 59.99932 * 3 2 1 7 7 C 1.37878 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00721 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99574 * 0.02562 * 7 2 1 10 10 N 1.46896 * 110.56061 * 61.21487 * 9 7 2 11 11 C 1.55911 * 110.50658 * 298.54371 * 9 7 2 12 12 C 1.56257 * 105.86900 * 234.77095 * 11 9 7 13 13 C 1.51733 * 101.91717 * 334.75161 * 12 11 9 14 14 H 1.09000 * 110.89410 * 288.39296 * 13 12 11 15 15 C 1.51737 * 122.51716 * 153.04154 * 13 12 11 16 16 C 1.57665 * 101.26316 * 206.20205 * 15 13 12 17 17 C 1.55913 * 105.74605 * 26.03803 * 16 15 13 18 18 C 1.49971 * 104.08405 * 6.05177 * 17 16 15 19 19 H 1.09003 * 108.49633 * 78.77464 * 18 17 16 20 20 H 0.97004 * 119.99806 * 359.97438 * 1 2 3 21 21 H 1.00904 * 110.99836 * 298.78431 * 10 9 7 22 22 H 1.00896 * 111.00037 * 62.73802 * 10 9 7 23 23 H 1.09004 * 110.17186 * 115.67414 * 11 9 7 24 24 H 1.08997 * 110.17389 * 353.87091 * 11 9 7 25 25 H 1.09002 * 110.94070 * 92.90683 * 12 11 9 26 26 H 1.09003 * 110.94028 * 216.59146 * 12 11 9 27 27 H 1.09000 * 110.93668 * 325.11478 * 15 13 12 28 28 H 1.08996 * 110.93750 * 88.80132 * 15 13 12 29 29 H 1.09006 * 110.67677 * 266.74310 * 16 15 13 30 30 H 1.09001 * 109.84960 * 144.90055 * 16 15 13 31 31 H 1.09004 * 110.51148 * 247.40493 * 17 16 15 32 32 H 1.09004 * 110.51059 * 124.70780 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 0.4198 -2.6150 -1.2052 11 6 0.3729 -2.6230 1.2830 12 6 0.7858 -3.9720 1.9549 13 6 1.3105 -4.7637 0.7716 14 1 0.4951 -5.0687 0.1157 15 6 2.3494 -5.8596 0.9196 16 6 3.0208 -5.8421 -0.5069 17 6 2.8123 -4.3974 -1.0549 18 6 2.2018 -3.6550 0.0962 19 1 2.9936 -3.3941 0.7984 20 1 -0.4850 0.8401 0.0004 21 1 -0.2656 -1.8755 -1.2444 22 1 0.9898 -2.6243 -2.0377 23 1 -0.6834 -2.6445 1.0149 24 1 0.5732 -1.7904 1.9575 25 1 1.5692 -3.8142 2.6962 26 1 -0.0776 -4.4650 2.4016 27 1 3.0622 -5.6168 1.7076 28 1 1.8753 -6.8228 1.1083 29 1 2.5430 -6.5668 -1.1661 30 1 4.0851 -6.0603 -0.4177 31 1 2.1324 -4.4066 -1.9069 32 1 3.7679 -3.9526 -1.3326 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260262861.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:25 Heat of formation + Delta-G solvation = -14.589151 kcal Electronic energy + Delta-G solvation = -13126.959777 eV Core-core repulsion = 11086.289226 eV Total energy + Delta-G solvation = -2040.670550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21890 -34.42134 -31.95268 -30.68008 -27.69589 -25.75448 -25.65793 -22.91841 -19.94145 -19.28615 -17.90740 -16.13670 -15.22735 -14.50168 -13.93701 -13.82795 -13.36304 -13.06028 -12.11998 -11.88690 -11.50187 -11.19995 -11.03927 -10.61511 -10.57463 -10.53504 -10.14578 -9.95142 -9.76423 -9.53481 -9.41442 -9.12467 -8.75971 -8.44926 -7.04812 -5.97631 -4.12605 3.24777 3.33962 3.38059 4.39377 5.05099 5.24031 5.41792 5.43024 5.93334 5.99366 6.09471 6.17445 6.22063 6.35009 6.46204 6.52893 6.56017 6.62225 6.78517 6.85844 7.03134 7.04354 7.21121 7.35761 7.48535 7.73208 7.83378 7.87613 8.29276 8.85394 9.10523 9.24342 9.58902 10.99309 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050137 B = 0.012456 C = 0.011586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.330607 B = 2247.329125 C = 2416.173308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.052 0.948 9 C 0.249 3.751 10 N -0.844 5.844 11 C -0.079 4.079 12 C -0.114 4.114 13 C -0.112 4.112 14 H 0.079 0.921 15 C -0.110 4.110 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.080 4.080 19 H 0.050 0.950 20 H 0.261 0.739 21 H 0.349 0.651 22 H 0.310 0.690 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -7.167 0.356 7.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.158 3.842 10 N -0.373 5.373 11 C -0.117 4.117 12 C -0.152 4.152 13 C -0.131 4.131 14 H 0.097 0.903 15 C -0.148 4.148 16 C -0.158 4.158 17 C -0.141 4.141 18 C -0.099 4.099 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.164 0.836 22 H 0.119 0.881 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.352 -7.742 0.678 8.120 hybrid contribution 0.925 2.043 -0.173 2.249 sum 3.277 -5.699 0.506 6.593 Atomic orbital electron populations 1.69807 1.05637 1.26505 1.50836 1.24993 0.94863 0.98915 0.94706 0.86628 0.80263 0.84087 0.77527 1.19940 1.21153 1.21053 1.21982 0.93274 0.91669 1.50870 0.92952 1.18150 0.88328 0.89714 0.88013 1.59487 1.19685 1.54022 1.04066 1.22737 0.99079 0.93048 0.96880 1.22025 0.98837 0.97896 0.96445 1.22314 0.97423 0.94987 0.98362 0.90305 1.22181 0.98040 0.98112 0.96468 1.23147 0.99194 0.97458 0.96010 1.21333 0.99707 0.94025 0.99006 1.21627 0.96752 0.95390 0.96168 0.93173 0.92909 0.83622 0.88144 0.93124 0.92654 0.93089 0.93803 0.92145 0.93029 0.92480 0.93045 0.91547 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 10.85 55.43 0.60 -23.68 16 2 C 0.07 1.81 5.10 -17.82 -0.09 1.72 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.54 -14.45 7.99 -34.43 -0.28 -14.73 16 8 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 9 C 0.25 6.02 0.61 -132.70 -0.08 5.94 16 10 N -0.84 -19.89 8.56 -0.15 0.00 -19.89 16 11 C -0.08 -1.88 5.39 -23.43 -0.13 -2.00 16 12 C -0.11 -2.29 6.62 -25.63 -0.17 -2.46 16 13 C -0.11 -2.15 2.94 -89.47 -0.26 -2.42 16 14 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 15 C -0.11 -1.78 6.70 -24.82 -0.17 -1.95 16 16 C -0.12 -1.88 6.99 -22.63 -0.16 -2.04 16 17 C -0.10 -1.90 6.42 -26.68 -0.17 -2.07 16 18 C -0.08 -1.70 1.69 -91.19 -0.15 -1.85 16 19 H 0.05 1.13 7.79 -51.93 -0.40 0.72 16 20 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 21 H 0.35 8.90 7.20 -39.29 -0.28 8.61 16 22 H 0.31 7.03 8.03 -39.29 -0.32 6.71 16 23 H 0.05 1.26 7.98 -51.93 -0.41 0.84 16 24 H 0.05 1.43 7.54 -51.93 -0.39 1.04 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.24 7.11 -51.93 -0.37 0.87 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 247.56 15.07 3.73 3.73 Total: -1.00 -26.54 247.56 -7.45 -33.98 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -5.10 Total: 11.65 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.66 Total: -21.86 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.60 Total: -43.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -26.54 -7.45 -33.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260262861.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.393 kcal (2) G-P(sol) polarization free energy of solvation -26.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds