Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 13 13 C 1.39770 * 125.83286 * 45.00093 * 12 2 1 14 14 C 1.36176 * 107.80993 * 179.97438 * 13 12 2 15 15 N 1.39209 * 126.22165 * 180.02562 * 14 13 12 16 16 N 1.35253 * 107.55783 * 0.02562 * 14 13 12 17 17 H 0.97001 * 126.04098 * 179.97438 * 16 14 13 18 18 N 1.30833 * 125.83953 * 224.69168 * 12 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.07993 * 126.09811 * 0.02562 * 13 12 2 27 27 H 0.97006 * 119.99512 * 0.02562 * 15 14 13 28 28 H 0.96992 * 120.00038 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8270 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0082 12 6 2.0323 -0.7105 -1.2305 13 6 1.5497 -0.5358 -2.5306 14 6 2.2626 -1.3542 -3.3530 15 7 2.0973 -1.4840 -4.7291 16 7 3.1604 -2.0180 -2.5897 17 1 3.8050 -2.6710 -2.9045 18 7 2.9986 -1.5919 -1.2654 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 0.7538 0.1301 -2.8297 27 1 1.4218 -0.9605 -5.1879 28 1 2.6576 -2.0979 -5.2291 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260276312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = 70.778847 kcal Electronic energy + Delta-G solvation = -12365.122007 eV Core-core repulsion = 10224.612947 eV Total energy + Delta-G solvation = -2140.509059 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.32063 -35.52482 -33.77947 -31.34942 -29.16747 -27.65489 -25.46194 -24.85850 -21.54098 -20.35932 -18.38708 -17.32245 -15.93811 -15.71606 -14.60321 -14.03277 -13.80253 -13.04773 -12.42199 -12.34609 -11.67994 -11.05620 -10.92743 -10.55489 -10.48608 -10.26691 -10.00152 -9.75495 -9.57114 -9.39949 -8.49720 -8.22309 -8.05401 -7.10476 -5.80782 -3.86531 2.90444 3.31471 3.44757 3.47396 3.52668 3.92318 4.34513 4.58862 5.46833 5.78472 6.13945 6.58179 6.72060 6.88499 7.00408 7.05225 7.18405 7.19501 7.47206 7.68794 7.75086 7.83457 7.99705 8.17267 8.21948 8.34793 8.58752 8.92267 9.18190 9.77203 11.21678 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.056499 B = 0.011006 C = 0.009859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.468868 B = 2543.543065 C = 2839.284929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.131 3.869 3 C -0.122 4.122 4 C -0.491 4.491 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.279 1.279 12 C 0.153 3.847 13 C -0.341 4.341 14 C 0.338 3.662 15 N -0.868 5.868 16 N -0.523 5.523 17 H 0.422 0.578 18 N -0.298 5.298 19 H 0.012 0.988 20 H 0.088 0.912 21 H 0.025 0.975 22 H 0.089 0.911 23 H 0.025 0.975 24 H 0.011 0.989 25 H 0.258 0.742 26 H 0.134 0.866 27 H 0.410 0.590 28 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -2.425 -11.061 11.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.129 3.871 3 C -0.181 4.181 4 C -0.530 4.530 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.205 1.205 12 C -0.015 4.015 13 C -0.375 4.375 14 C 0.112 3.888 15 N -0.418 5.418 16 N -0.235 5.235 17 H 0.263 0.737 18 N -0.119 5.119 19 H 0.031 0.969 20 H 0.107 0.893 21 H 0.044 0.956 22 H 0.108 0.892 23 H 0.044 0.956 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.151 0.849 27 H 0.240 0.760 28 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.669 -2.928 -10.119 10.665 hybrid contribution 0.063 -0.506 -0.424 0.663 sum 1.731 -3.433 -10.543 11.223 Atomic orbital electron populations 1.21758 0.96692 0.99193 1.00467 1.16823 0.92303 0.91333 0.86626 1.21744 0.98532 0.97332 1.00481 1.21173 1.30345 1.11965 0.89509 0.91590 1.24896 0.95256 0.95094 0.98720 1.69800 1.37464 1.23118 1.22995 0.86645 0.79177 0.79715 0.82336 1.20450 1.21552 1.20518 1.22888 0.90834 0.92238 0.95577 1.20542 1.11372 1.12673 0.92927 1.18052 0.92657 0.94580 0.83550 1.41407 1.45187 1.51974 1.03215 1.46401 1.32106 1.38327 1.06667 0.73657 1.77610 1.23290 1.19845 0.91164 0.96854 0.89329 0.95566 0.89238 0.95563 0.96952 0.93200 0.84858 0.75955 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 7.98 37.16 0.30 -2.74 15 2 C 0.13 3.41 0.69 -156.81 -0.11 3.30 15 3 C -0.12 -3.07 8.23 37.15 0.31 -2.77 15 4 C -0.49 -13.99 7.89 -34.44 -0.27 -14.26 15 5 H 0.07 1.95 7.01 -52.49 -0.37 1.58 15 6 C 0.06 1.67 5.15 -17.82 -0.09 1.58 15 7 N -0.89 -25.06 9.35 55.43 0.52 -24.55 15 8 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 15 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 10 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 12 C 0.15 3.67 5.64 -82.44 -0.47 3.21 15 13 C -0.34 -6.94 10.13 -39.75 -0.40 -7.34 15 14 C 0.34 5.74 8.40 -153.40 -1.29 4.46 15 15 N -0.87 -9.77 9.11 31.11 0.28 -9.49 15 16 N -0.52 -9.45 7.37 31.10 0.23 -9.22 15 17 H 0.42 5.93 8.96 -182.63 -1.64 4.29 15 18 N -0.30 -7.02 11.57 33.65 0.39 -6.63 15 19 H 0.01 0.28 7.53 -51.93 -0.39 -0.11 15 20 H 0.09 2.35 6.07 -51.93 -0.32 2.03 15 21 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 22 H 0.09 2.39 6.07 -51.93 -0.32 2.07 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 15 25 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 26 H 0.13 2.51 7.70 -52.49 -0.40 2.11 15 27 H 0.41 3.84 8.96 -40.82 -0.37 3.48 15 28 H 0.39 3.29 8.95 -40.82 -0.37 2.93 15 LS Contribution 236.35 15.07 3.56 3.56 Total: -1.00 -31.58 236.35 -6.63 -38.21 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.56 Total: 5.68 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -2.03 Total: -14.57 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 1.42 Total: -49.89 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.58 -6.63 -38.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260276312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.984 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds