Wall clock time and date at job start Mon Mar 30 2020 01:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 13 13 C 1.39770 * 125.83286 * 45.00093 * 12 2 1 14 14 C 1.36176 * 107.80993 * 179.97438 * 13 12 2 15 15 N 1.39209 * 126.22165 * 180.02562 * 14 13 12 16 16 N 1.35253 * 107.55783 * 0.02562 * 14 13 12 17 17 H 0.97001 * 126.04098 * 179.97438 * 16 14 13 18 18 N 1.30833 * 125.83953 * 224.69168 * 12 2 1 19 19 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 20 20 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 21 21 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.07993 * 126.09811 * 0.02562 * 13 12 2 27 27 H 0.97006 * 119.99512 * 0.02562 * 15 14 13 28 28 H 0.96992 * 120.00038 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8270 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0082 12 6 2.0323 -0.7105 -1.2305 13 6 1.5497 -0.5358 -2.5306 14 6 2.2626 -1.3542 -3.3530 15 7 2.0973 -1.4840 -4.7291 16 7 3.1604 -2.0180 -2.5897 17 1 3.8050 -2.6710 -2.9045 18 7 2.9986 -1.5919 -1.2654 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 0.7082 1.1608 3.4844 26 1 0.7538 0.1301 -2.8297 27 1 1.4218 -0.9605 -5.1879 28 1 2.6576 -2.0979 -5.2291 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260276312.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:13 Heat of formation + Delta-G solvation = 48.461941 kcal Electronic energy + Delta-G solvation = -12366.089740 eV Core-core repulsion = 10224.612947 eV Total energy + Delta-G solvation = -2141.476793 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.85295 -37.38985 -35.10868 -33.31143 -30.85827 -29.13689 -27.45647 -26.95319 -23.34797 -21.80903 -20.04104 -18.81542 -17.74071 -17.03815 -16.63387 -15.54273 -15.45373 -14.79947 -14.39338 -13.93457 -13.58179 -13.06157 -12.91181 -12.52374 -12.38620 -12.07179 -11.80697 -11.55119 -11.42606 -11.23515 -10.48829 -10.30918 -9.68806 -8.48055 -7.92162 -6.04195 1.42686 1.46458 1.47432 1.55292 2.01092 2.26681 2.53210 3.21290 3.31322 4.18017 4.68553 4.90575 4.98768 5.04370 5.18825 5.23451 5.26501 5.45892 5.71043 5.73222 5.92048 6.16200 6.19768 6.26070 6.52793 6.84173 6.98242 7.05857 7.36616 7.61854 9.07838 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.056499 B = 0.011006 C = 0.009859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.468868 B = 2543.543065 C = 2839.284929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.121 3.879 3 C -0.110 4.110 4 C -0.512 4.512 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.906 5.906 8 Si 0.945 3.055 9 H -0.280 1.280 10 H -0.280 1.280 11 H -0.279 1.279 12 C 0.128 3.872 13 C -0.370 4.370 14 C 0.367 3.633 15 N -0.838 5.838 16 N -0.511 5.511 17 H 0.440 0.560 18 N -0.345 5.345 19 H 0.037 0.963 20 H 0.067 0.933 21 H 0.015 0.985 22 H 0.069 0.931 23 H 0.012 0.988 24 H 0.033 0.967 25 H 0.259 0.741 26 H 0.145 0.855 27 H 0.424 0.576 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -2.908 -12.757 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 C -0.169 4.169 4 C -0.551 4.551 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.546 5.546 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.205 1.205 11 H -0.205 1.205 12 C -0.039 4.039 13 C -0.404 4.404 14 C 0.137 3.863 15 N -0.391 5.391 16 N -0.226 5.226 17 H 0.285 0.715 18 N -0.168 5.168 19 H 0.056 0.944 20 H 0.086 0.914 21 H 0.035 0.965 22 H 0.088 0.912 23 H 0.031 0.969 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.163 0.837 27 H 0.257 0.743 28 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.735 -3.419 -11.860 12.465 hybrid contribution 0.073 -0.402 -0.039 0.410 sum 1.808 -3.821 -11.899 12.628 Atomic orbital electron populations 1.21577 0.96244 0.98482 1.00531 1.16796 0.92741 0.91517 0.87072 1.21578 0.97499 0.97363 1.00469 1.21345 1.30615 1.11868 0.91232 0.93528 1.25490 0.95517 0.95813 1.00883 1.69902 1.37642 1.23578 1.23455 0.85819 0.78449 0.78746 0.79737 1.20601 1.20530 1.20505 1.22664 0.91953 0.93084 0.96218 1.20609 1.13009 1.14717 0.92042 1.18025 0.90568 0.92319 0.85360 1.41376 1.45253 1.51757 1.00718 1.46206 1.32564 1.38460 1.05357 0.71547 1.77462 1.24187 1.20939 0.94201 0.94434 0.91406 0.96546 0.91186 0.96875 0.94803 0.93120 0.83742 0.74292 0.75875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.46 7.98 71.98 0.57 -4.89 15 2 C 0.12 6.32 0.69 -53.67 -0.04 6.29 15 3 C -0.11 -5.60 8.23 71.98 0.59 -5.00 15 4 C -0.51 -29.73 7.89 25.60 0.20 -29.53 15 5 H 0.05 2.83 7.01 -2.91 -0.02 2.81 15 6 C 0.02 1.20 5.15 84.66 0.44 1.63 15 7 N -0.91 -51.31 9.35 21.45 0.20 -51.11 15 8 Si 0.95 45.61 29.54 68.60 2.03 47.63 15 9 H -0.28 -13.49 7.11 99.48 0.71 -12.78 15 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 15 12 C 0.13 6.10 5.64 43.08 0.24 6.34 15 13 C -0.37 -14.36 10.13 22.16 0.22 -14.13 15 14 C 0.37 11.41 8.40 131.43 1.10 12.51 15 15 N -0.84 -15.28 9.11 -55.50 -0.51 -15.79 15 16 N -0.51 -17.44 7.37 -55.50 -0.41 -17.85 15 17 H 0.44 11.26 8.96 -213.34 -1.91 9.35 15 18 N -0.34 -16.19 11.57 -47.44 -0.55 -16.74 15 19 H 0.04 1.62 7.53 -2.39 -0.02 1.60 15 20 H 0.07 3.62 6.07 -2.39 -0.01 3.61 15 21 H 0.02 0.78 8.14 -2.38 -0.02 0.76 15 22 H 0.07 3.79 6.07 -2.39 -0.01 3.77 15 23 H 0.01 0.63 8.14 -2.39 -0.02 0.61 15 24 H 0.03 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.26 14.06 8.31 -92.71 -0.77 13.29 15 26 H 0.14 5.11 7.70 -2.91 -0.02 5.09 15 27 H 0.42 6.02 8.96 -92.70 -0.83 5.19 15 28 H 0.41 4.94 8.95 -92.71 -0.83 4.11 15 Total: -1.00 -68.38 236.35 1.73 -66.65 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -2.37 Total: 13.97 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 3.34 Total: -26.78 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -1.26 Total: -101.48 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.38 1.73 -66.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260276312.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.110 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds