Wall clock time and date at job start Mon Mar 30 2020 02:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00302 * 2 1 4 4 H 1.48499 * 109.47006 * 298.05130 * 3 2 1 5 5 H 1.48507 * 109.46974 * 58.05059 * 3 2 1 6 6 H 1.48502 * 109.47030 * 178.05069 * 3 2 1 7 7 C 1.37877 * 119.99432 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00474 * 353.52567 * 7 2 1 9 9 C 1.50707 * 119.99685 * 173.53006 * 7 2 1 10 10 C 1.53002 * 110.05462 * 83.14713 * 9 7 2 11 11 N 1.46899 * 109.47114 * 307.77479 * 10 9 7 12 12 C 1.54389 * 110.11554 * 321.63406 * 9 7 2 13 13 C 1.55288 * 104.25874 * 264.30095 * 12 9 7 14 14 C 1.54991 * 102.65015 * 322.30222 * 13 12 9 15 15 C 1.53479 * 110.06986 * 204.63821 * 9 7 2 16 16 C 1.52552 * 121.08625 * 263.35549 * 15 9 7 17 17 C 1.52570 * 121.05109 * 335.07002 * 15 9 7 18 18 H 0.97008 * 119.99676 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46662 * 67.77296 * 10 9 7 20 20 H 1.08993 * 109.46932 * 187.77137 * 10 9 7 21 21 H 1.00901 * 110.99895 * 141.70175 * 11 10 9 22 22 H 1.00897 * 111.00413 * 265.65884 * 11 10 9 23 23 H 1.09001 * 110.48266 * 22.97818 * 12 9 7 24 24 H 1.08999 * 110.48142 * 145.61666 * 12 9 7 25 25 H 1.09002 * 110.88727 * 204.00020 * 13 12 9 26 26 H 1.08994 * 110.75696 * 80.55023 * 13 12 9 27 27 H 1.08993 * 110.51333 * 278.84296 * 14 13 12 28 28 H 1.09000 * 110.50502 * 156.27126 * 14 13 12 29 29 H 1.09000 * 117.51372 * 217.88907 * 16 15 9 30 30 H 1.09005 * 117.50855 * 2.97090 * 16 15 9 31 31 H 1.08996 * 117.51105 * 356.97287 * 17 15 9 32 32 H 1.08997 * 117.50791 * 142.03062 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.9265 2.3756 -1.2356 5 1 1.8551 2.4168 1.1880 6 1 3.7085 1.3466 0.0476 7 6 2.0044 -1.1941 -0.0005 8 1 1.4696 -2.1264 0.1045 9 6 3.5043 -1.1983 -0.1476 10 6 4.1652 -0.9488 1.2095 11 7 3.5960 0.2620 1.8162 12 6 3.9418 -0.1151 -1.1571 13 6 4.0810 -0.8794 -2.5017 14 6 4.6754 -2.2404 -2.0586 15 6 3.9733 -2.5416 -0.7229 16 6 4.4739 -3.6573 0.1891 17 6 3.1398 -3.8073 -0.5467 18 1 -0.4850 0.8401 -0.0004 19 1 3.9852 -1.8020 1.8636 20 1 5.2383 -0.8163 1.0721 21 1 3.4849 0.1492 2.8127 22 1 4.1595 1.0717 1.6045 23 1 3.1809 0.6613 -1.2371 24 1 4.8987 0.3160 -0.8630 25 1 4.7638 -0.3606 -3.1746 26 1 3.1066 -1.0178 -2.9700 27 1 5.7525 -2.1578 -1.9138 28 1 4.4479 -3.0135 -2.7925 29 1 5.3133 -4.2570 -0.1630 30 1 4.4390 -3.4824 1.2644 31 1 2.2274 -3.7309 0.0446 32 1 3.1012 -4.5052 -1.3830 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260370991.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:21 Heat of formation + Delta-G solvation = 39.198291 kcal Electronic energy + Delta-G solvation = -13409.716304 eV Core-core repulsion = 11371.378152 eV Total energy + Delta-G solvation = -2038.338152 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66025 -36.09958 -34.43571 -33.96394 -30.32266 -26.98013 -26.32568 -23.72386 -23.06583 -21.71254 -19.11847 -17.78596 -17.17065 -17.00117 -16.38908 -15.68348 -14.94960 -14.73382 -14.35688 -13.73627 -13.60915 -13.05008 -12.94218 -12.75241 -12.24644 -11.98251 -11.58667 -11.37517 -11.12050 -10.83459 -10.80305 -10.53789 -10.24364 -9.94884 -9.08311 -7.97505 -6.03173 1.54389 1.70850 1.77374 2.73057 3.13573 3.42861 3.78082 3.95249 4.03535 4.24344 4.35264 4.49227 4.51388 4.66338 4.73801 4.89681 4.92653 4.98737 5.01105 5.11397 5.16380 5.33404 5.37530 5.49443 5.59922 5.60497 5.73999 5.96524 6.49129 6.54407 6.74534 7.02859 7.69810 9.13641 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.036954 B = 0.017960 C = 0.017650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.518294 B = 1558.649848 C = 1585.983288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C 0.003 3.997 3 Si 1.031 2.969 4 H -0.371 1.371 5 H -0.338 1.338 6 H -0.203 1.203 7 C -0.474 4.474 8 H 0.025 0.975 9 C 0.066 3.934 10 C 0.083 3.917 11 N -0.841 5.841 12 C -0.108 4.108 13 C -0.122 4.122 14 C -0.075 4.075 15 C -0.116 4.116 16 C -0.157 4.157 17 C -0.181 4.181 18 H 0.249 0.751 19 H 0.053 0.947 20 H 0.046 0.954 21 H 0.339 0.661 22 H 0.342 0.658 23 H 0.020 0.980 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.623 -2.639 -0.477 14.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.190 4.190 3 Si 0.874 3.126 4 H -0.309 1.309 5 H -0.271 1.271 6 H -0.129 1.129 7 C -0.511 4.511 8 H 0.043 0.957 9 C 0.065 3.935 10 C -0.048 4.048 11 N -0.376 5.376 12 C -0.144 4.144 13 C -0.159 4.159 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.193 4.193 17 C -0.218 4.218 18 H 0.057 0.943 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.154 0.846 22 H 0.157 0.843 23 H 0.038 0.962 24 H 0.093 0.907 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.888 -2.760 -0.892 14.188 hybrid contribution -0.289 0.821 0.666 1.096 sum 13.599 -1.939 -0.226 13.739 Atomic orbital electron populations 1.70190 1.09344 1.26848 1.55492 1.26216 0.95032 1.04415 0.93339 0.85113 0.82209 0.75175 0.70068 1.30871 1.27099 1.12877 1.20982 0.91050 0.91893 1.47179 0.95719 1.18695 0.93281 0.90112 0.91449 1.21905 0.94767 0.91036 0.97045 1.58652 1.55396 1.06634 1.16899 1.23046 0.98012 0.96864 0.96498 1.22534 0.99879 0.96703 0.96818 1.21804 0.99347 0.96286 0.93753 1.21800 1.01829 0.90366 0.97683 1.22967 0.96899 1.01592 0.97879 1.22783 0.94970 1.00774 1.03250 0.94295 0.92816 0.93539 0.84618 0.84270 0.96230 0.90702 0.89900 0.94174 0.89387 0.91683 0.86986 0.89382 0.91829 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.55 13.96 21.45 0.30 -65.25 16 2 C 0.00 0.16 5.29 84.66 0.45 0.61 16 3 Si 1.03 52.00 20.95 68.60 1.44 53.43 16 4 H -0.37 -20.11 7.11 99.48 0.71 -19.41 16 5 H -0.34 -17.63 7.11 99.48 0.71 -16.92 16 6 H -0.20 -8.27 2.73 99.48 0.27 -8.00 16 7 C -0.47 -26.83 8.21 25.60 0.21 -26.62 16 8 H 0.02 1.59 5.92 -2.91 -0.02 1.57 16 9 C 0.07 2.83 0.60 -52.29 -0.03 2.80 16 10 C 0.08 3.02 5.10 86.30 0.44 3.46 16 11 N -0.84 -31.42 5.01 -186.72 -0.94 -32.35 16 12 C -0.11 -4.33 3.76 31.85 0.12 -4.21 16 13 C -0.12 -4.32 6.94 32.06 0.22 -4.09 16 14 C -0.07 -2.31 6.57 31.57 0.21 -2.10 16 15 C -0.12 -4.27 2.06 -52.02 -0.11 -4.37 16 16 C -0.16 -4.80 9.61 30.48 0.29 -4.51 16 17 C -0.18 -6.82 9.55 30.48 0.29 -6.53 16 18 H 0.25 16.10 8.31 -92.70 -0.77 15.33 16 19 H 0.05 1.96 6.36 -2.38 -0.02 1.94 16 20 H 0.05 1.42 7.97 -2.39 -0.02 1.40 16 21 H 0.34 11.13 9.08 -89.69 -0.81 10.31 16 22 H 0.34 11.20 6.69 -89.70 -0.60 10.60 16 23 H 0.02 0.91 2.23 -2.39 -0.01 0.91 16 24 H 0.07 2.55 7.24 -2.39 -0.02 2.54 16 25 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.06 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.09 2.70 6.37 -2.38 -0.02 2.69 16 31 H 0.06 2.88 6.30 -2.39 -0.02 2.87 16 32 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -72.28 229.83 2.17 -70.11 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.72 Total: 19.63 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 2.09 Total: -45.57 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -0.64 Total: -97.60 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 1.44 Total: 53.43 kcal Total: -72.28 2.17 -70.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260370991.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.306 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds