Wall clock time and date at job start Mon Mar 30 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48493 * 109.47277 * 270.00545 * 3 2 1 5 5 H 1.48502 * 109.46783 * 30.00122 * 3 2 1 6 6 H 1.48500 * 109.47090 * 149.99811 * 3 2 1 7 7 C 1.37878 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00508 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99610 * 179.97438 * 7 2 1 10 10 H 1.09001 * 110.72839 * 56.90161 * 9 7 2 11 11 C 1.54938 * 110.66670 * 293.80840 * 9 7 2 12 12 C 1.54599 * 102.92049 * 204.15325 * 11 9 7 13 13 C 1.53992 * 105.14371 * 21.95541 * 12 11 9 14 14 N 1.47905 * 107.05249 * 1.22423 * 13 12 11 15 15 C 1.46903 * 110.99849 * 214.15254 * 14 13 12 16 16 C 1.53778 * 113.61542 * 296.49306 * 15 14 13 17 17 C 1.53781 * 87.08204 * 220.01801 * 16 15 14 18 18 C 1.53779 * 87.08073 * 25.43583 * 17 16 15 19 19 H 0.96992 * 119.99909 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.72643 * 85.79491 * 11 9 7 21 21 H 1.08999 * 110.72681 * 322.50896 * 11 9 7 22 22 H 1.09006 * 110.30814 * 263.03583 * 12 11 9 23 23 H 1.09000 * 110.31049 * 140.87362 * 12 11 9 24 24 H 1.09006 * 109.91877 * 241.87762 * 13 12 11 25 25 H 1.08996 * 110.08166 * 120.66443 * 13 12 11 26 26 H 1.08999 * 112.90406 * 67.74884 * 15 14 13 27 27 H 1.09001 * 113.60951 * 105.47126 * 16 15 14 28 28 H 1.08998 * 113.61468 * 334.56743 * 16 15 14 29 29 H 1.09001 * 113.61454 * 139.98090 * 17 16 15 30 30 H 1.09001 * 113.61377 * 270.88704 * 17 16 15 31 31 H 1.09002 * 113.61615 * 89.11496 * 18 17 16 32 32 H 1.09000 * 113.61297 * 220.02016 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8977 -0.6375 0.8529 11 6 4.0578 -0.6085 -1.3275 12 6 5.4663 -1.2379 -1.4290 13 6 5.4093 -2.4964 -0.5435 14 7 4.0359 -2.5837 -0.0017 15 6 4.0402 -3.1453 1.3558 16 6 4.5524 -4.5938 1.4215 17 6 3.4383 -4.8580 2.4481 18 6 2.6732 -3.6916 1.8008 19 1 -0.4849 0.8400 0.0004 20 1 4.1240 0.4780 -1.2712 21 1 3.4368 -0.9151 -2.1692 22 1 6.2185 -0.5444 -1.0530 23 1 5.6850 -1.5112 -2.4613 24 1 6.1258 -2.4085 0.2733 25 1 5.6309 -3.3827 -1.1380 26 1 4.5052 -2.4841 2.0870 27 1 5.5570 -4.6833 1.8348 28 1 4.4265 -5.1442 0.4892 29 1 2.9492 -5.8240 2.3228 30 1 3.7388 -4.6650 3.4780 31 1 2.0336 -3.9954 0.9721 32 1 2.1609 -3.0528 2.5201 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260412078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:30 Heat of formation + Delta-G solvation = 23.861297 kcal Electronic energy + Delta-G solvation = -12920.646794 eV Core-core repulsion = 10881.643581 eV Total energy + Delta-G solvation = -2039.003214 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.96195 -36.41986 -32.47194 -29.99748 -28.95332 -24.94644 -24.30555 -23.46030 -20.09378 -19.65811 -18.79300 -16.63565 -15.81985 -15.00318 -14.50260 -13.84669 -13.33410 -13.03509 -12.58396 -11.95751 -11.83659 -11.71346 -11.66251 -11.13296 -10.69769 -10.60399 -10.25191 -10.12665 -9.90900 -9.80098 -9.64705 -9.42081 -9.02665 -8.49176 -7.42765 -6.01237 -3.97613 3.29384 3.38375 3.38634 4.44494 4.87053 5.13835 5.21526 5.25066 5.43896 5.50656 5.55081 5.67088 5.83142 6.03294 6.10746 6.19044 6.25075 6.30212 6.40734 6.42546 6.61579 6.73101 6.78231 6.83493 6.90690 7.03793 7.29703 7.67868 7.87438 8.13684 8.70563 9.10130 9.61972 11.11850 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.014986 C = 0.011436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.595264 B = 1868.023274 C = 2447.741776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.487 4.487 8 H 0.085 0.915 9 C 0.171 3.829 10 H 0.008 0.992 11 C -0.129 4.129 12 C -0.133 4.133 13 C 0.039 3.961 14 N -0.494 5.494 15 C 0.058 3.942 16 C -0.131 4.131 17 C -0.149 4.149 18 C -0.105 4.105 19 H 0.262 0.738 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.028 0.972 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 -4.839 1.614 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.064 3.936 10 H 0.026 0.974 11 C -0.168 4.168 12 C -0.171 4.171 13 C -0.090 4.090 14 N -0.218 5.218 15 C -0.051 4.051 16 C -0.169 4.169 17 C -0.187 4.187 18 C -0.143 4.143 19 H 0.072 0.928 20 H 0.066 0.934 21 H 0.094 0.906 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.043 -5.066 1.305 10.447 hybrid contribution 1.015 1.634 0.491 1.985 sum 10.058 -3.432 1.796 10.778 Atomic orbital electron populations 1.69880 1.06011 1.26639 1.51521 1.24874 0.94631 0.98508 0.95091 0.87030 0.80070 0.84464 0.78379 1.20304 1.21974 1.19400 1.20872 0.87808 0.94687 1.49210 0.89692 1.20819 0.96693 0.84199 0.91879 0.97413 1.22889 0.94248 0.98009 1.01631 1.22417 0.98528 0.96827 0.99342 1.22699 0.91541 0.97573 0.97144 1.64929 1.15465 1.22575 1.18834 1.23076 0.97947 0.93671 0.90426 1.22977 0.97217 0.97200 0.99488 1.22815 0.98500 0.99416 0.97983 1.22767 0.96046 0.95502 1.00011 0.92768 0.93368 0.90645 0.92906 0.92099 0.95322 0.91685 0.93091 0.92853 0.89755 0.91866 0.91087 0.89066 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.87 21.79 24.75 -169.99 -4.21 17.58 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.27 -6.52 6.46 56.52 0.37 -6.15 16 7 C -0.49 -13.62 8.57 -34.44 -0.30 -13.92 16 8 H 0.09 2.58 6.92 -52.49 -0.36 2.22 16 9 C 0.17 4.13 1.71 -66.94 -0.11 4.02 16 10 H 0.01 0.21 6.83 -51.93 -0.35 -0.15 16 11 C -0.13 -2.84 5.49 -24.87 -0.14 -2.98 16 12 C -0.13 -2.38 6.93 -25.37 -0.18 -2.56 16 13 C 0.04 0.70 6.18 -2.75 -0.02 0.68 16 14 N -0.49 -10.47 4.93 -215.11 -1.06 -11.53 16 15 C 0.06 1.11 2.87 -66.90 -0.19 0.92 16 16 C -0.13 -2.03 7.29 -25.92 -0.19 -2.22 16 17 C -0.15 -2.23 8.08 -25.92 -0.21 -2.44 16 18 C -0.11 -2.00 6.54 -25.92 -0.17 -2.17 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 20 H 0.05 1.06 5.42 -51.93 -0.28 0.78 16 21 H 0.07 1.72 8.05 -51.93 -0.42 1.31 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.03 0.48 7.77 -51.93 -0.40 0.08 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.99 8.03 -51.93 -0.42 0.58 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.90 7.55 -51.93 -0.39 1.51 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 247.45 15.07 3.73 3.73 Total: -1.00 -29.36 247.45 -7.54 -36.91 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.18 Total: -1.21 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.60 Total: -18.75 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.29 Total: -38.26 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.21 Total: 17.58 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.36 -7.54 -36.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.769 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds