Wall clock time and date at job start Mon Mar 30 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99887 * 2 1 4 4 H 1.48493 * 109.47277 * 270.00545 * 3 2 1 5 5 H 1.48502 * 109.46783 * 30.00122 * 3 2 1 6 6 H 1.48500 * 109.47090 * 149.99811 * 3 2 1 7 7 C 1.37878 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00508 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99610 * 179.97438 * 7 2 1 10 10 H 1.09001 * 110.72839 * 56.90161 * 9 7 2 11 11 C 1.54938 * 110.66670 * 293.80840 * 9 7 2 12 12 C 1.54599 * 102.92049 * 204.15325 * 11 9 7 13 13 C 1.53992 * 105.14371 * 21.95541 * 12 11 9 14 14 N 1.47905 * 107.05249 * 1.22423 * 13 12 11 15 15 C 1.46903 * 110.99849 * 214.15254 * 14 13 12 16 16 C 1.53778 * 113.61542 * 296.49306 * 15 14 13 17 17 C 1.53781 * 87.08204 * 220.01801 * 16 15 14 18 18 C 1.53779 * 87.08073 * 25.43583 * 17 16 15 19 19 H 0.96992 * 119.99909 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.72643 * 85.79491 * 11 9 7 21 21 H 1.08999 * 110.72681 * 322.50896 * 11 9 7 22 22 H 1.09006 * 110.30814 * 263.03583 * 12 11 9 23 23 H 1.09000 * 110.31049 * 140.87362 * 12 11 9 24 24 H 1.09006 * 109.91877 * 241.87762 * 13 12 11 25 25 H 1.08996 * 110.08166 * 120.66443 * 13 12 11 26 26 H 1.08999 * 112.90406 * 67.74884 * 15 14 13 27 27 H 1.09001 * 113.60951 * 105.47126 * 16 15 14 28 28 H 1.08998 * 113.61468 * 334.56743 * 16 15 14 29 29 H 1.09001 * 113.61454 * 139.98090 * 17 16 15 30 30 H 1.09001 * 113.61377 * 270.88704 * 17 16 15 31 31 H 1.09002 * 113.61615 * 89.11496 * 18 17 16 32 32 H 1.09000 * 113.61297 * 220.02016 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8977 -0.6375 0.8529 11 6 4.0578 -0.6085 -1.3275 12 6 5.4663 -1.2379 -1.4290 13 6 5.4093 -2.4964 -0.5435 14 7 4.0359 -2.5837 -0.0017 15 6 4.0402 -3.1453 1.3558 16 6 4.5524 -4.5938 1.4215 17 6 3.4383 -4.8580 2.4481 18 6 2.6732 -3.6916 1.8008 19 1 -0.4849 0.8400 0.0004 20 1 4.1240 0.4780 -1.2712 21 1 3.4368 -0.9151 -2.1692 22 1 6.2185 -0.5444 -1.0530 23 1 5.6850 -1.5112 -2.4613 24 1 6.1258 -2.4085 0.2733 25 1 5.6309 -3.3827 -1.1380 26 1 4.5052 -2.4841 2.0870 27 1 5.5570 -4.6833 1.8348 28 1 4.4265 -5.1442 0.4892 29 1 2.9492 -5.8240 2.3228 30 1 3.7388 -4.6650 3.4780 31 1 2.0336 -3.9954 0.9721 32 1 2.1609 -3.0528 2.5201 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412078.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:30 Heat of formation + Delta-G solvation = 3.943882 kcal Electronic energy + Delta-G solvation = -12921.510478 eV Core-core repulsion = 10881.643581 eV Total energy + Delta-G solvation = -2039.866898 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.48726 -37.93495 -34.62400 -31.54295 -30.81159 -26.39672 -26.11006 -24.99092 -21.63557 -21.43097 -20.27378 -18.70116 -17.43292 -16.57500 -16.17622 -15.53600 -15.09599 -14.59312 -14.46390 -13.44917 -13.40275 -13.32321 -13.16834 -12.89648 -12.52949 -12.12585 -12.00722 -11.71120 -11.58157 -11.43700 -11.12531 -11.06899 -10.92281 -10.64121 -9.06207 -8.24444 -6.24768 1.29792 1.32427 1.41534 2.33675 3.08072 3.33138 3.72392 3.90440 3.99730 4.06577 4.11266 4.26570 4.32739 4.59199 4.65855 4.79315 4.89338 4.90266 5.02599 5.03311 5.05269 5.08865 5.21742 5.30568 5.44563 5.48546 5.62759 5.70435 6.02050 6.52907 6.63414 6.82095 7.38620 8.92369 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.035141 B = 0.014986 C = 0.011436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.595264 B = 1868.023274 C = 2447.741776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.254 1.254 7 C -0.485 4.485 8 H 0.043 0.957 9 C 0.170 3.830 10 H -0.003 1.003 11 C -0.132 4.132 12 C -0.125 4.125 13 C 0.037 3.963 14 N -0.513 5.513 15 C 0.045 3.955 16 C -0.112 4.112 17 C -0.129 4.129 18 C -0.120 4.120 19 H 0.264 0.736 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -5.110 1.634 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.185 4.185 3 Si 0.760 3.240 4 H -0.189 1.189 5 H -0.220 1.220 6 H -0.178 1.178 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.062 3.938 10 H 0.014 0.986 11 C -0.170 4.170 12 C -0.162 4.162 13 C -0.090 4.090 14 N -0.237 5.237 15 C -0.064 4.064 16 C -0.149 4.149 17 C -0.167 4.167 18 C -0.158 4.158 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.092 0.908 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.079 0.921 32 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.136 -5.358 1.320 13.332 hybrid contribution -0.009 1.625 0.499 1.700 sum 12.127 -3.733 1.819 12.818 Atomic orbital electron populations 1.70036 1.07905 1.27623 1.53650 1.25689 0.95363 1.02392 0.95048 0.86005 0.79146 0.79665 0.79135 1.18857 1.22026 1.17824 1.21075 0.90322 0.93043 1.47910 0.93916 1.20625 0.94005 0.86449 0.92675 0.98594 1.22764 0.96794 0.98170 0.99309 1.22417 0.95996 0.96751 1.01071 1.22821 0.89781 0.98602 0.97821 1.64839 1.18001 1.20554 1.20321 1.23265 0.97995 0.95738 0.89437 1.22863 0.98689 0.93719 0.99663 1.22760 0.97046 0.98139 0.98718 1.22741 0.96220 0.97721 0.99132 0.92749 0.93311 0.92416 0.90778 0.89696 0.93646 0.89700 0.93399 0.89981 0.89800 0.90207 0.89106 0.92078 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.36 13.96 21.45 0.30 -60.07 16 2 C 0.01 0.68 5.46 84.65 0.46 1.15 16 3 Si 0.93 45.28 24.75 68.60 1.70 46.98 16 4 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.25 -11.59 6.46 99.48 0.64 -10.95 16 7 C -0.48 -28.14 8.57 25.60 0.22 -27.92 16 8 H 0.04 2.77 6.92 -2.91 -0.02 2.75 16 9 C 0.17 8.19 1.71 44.52 0.08 8.26 16 10 H 0.00 -0.17 6.83 -2.39 -0.02 -0.19 16 11 C -0.13 -5.58 5.49 31.80 0.17 -5.40 16 12 C -0.12 -3.99 6.93 31.47 0.22 -3.77 16 13 C 0.04 1.22 6.18 86.44 0.53 1.75 16 14 N -0.51 -21.26 4.93 -834.48 -4.11 -25.37 16 15 C 0.04 1.66 2.87 45.44 0.13 1.79 16 16 C -0.11 -3.13 7.29 31.12 0.23 -2.90 16 17 C -0.13 -3.58 8.08 31.12 0.25 -3.33 16 18 C -0.12 -4.68 6.54 31.12 0.20 -4.48 16 19 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 20 H 0.05 2.03 5.42 -2.39 -0.01 2.01 16 21 H 0.06 2.60 8.05 -2.39 -0.02 2.59 16 22 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 23 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.05 1.34 7.77 -2.38 -0.02 1.32 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.05 1.81 8.03 -2.39 -0.02 1.79 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 2.71 7.55 -2.39 -0.02 2.69 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.79 247.45 1.39 -64.40 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.01 Total: 8.91 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 2.50 Total: -34.85 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -3.81 Total: -85.43 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.70 Total: 46.98 kcal Total: -65.79 1.39 -64.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412078.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.340 kcal (2) G-P(sol) polarization free energy of solvation -65.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds