Wall clock time and date at job start Mon Mar 30 2020 03:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00482 * 2 1 4 4 H 1.48497 * 109.47190 * 240.00663 * 3 2 1 5 5 H 1.48500 * 109.46578 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47411 * 120.00194 * 3 2 1 7 7 C 1.37879 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99874 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99998 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.41963 * 302.30933 * 9 7 2 11 11 C 1.54901 * 110.37614 * 64.62489 * 9 7 2 12 12 C 1.55138 * 101.65557 * 155.90276 * 11 9 7 13 13 C 1.54328 * 103.01599 * 324.34514 * 12 11 9 14 14 N 1.47437 * 107.23204 * 22.28547 * 13 12 11 15 15 C 1.46897 * 111.00274 * 123.26030 * 14 13 12 16 16 C 1.53780 * 113.61751 * 170.58515 * 15 14 13 17 17 C 1.53781 * 87.08134 * 220.01663 * 16 15 14 18 18 C 1.53776 * 87.17336 * 25.38950 * 17 16 15 19 19 H 0.97003 * 119.99383 * 359.97438 * 1 2 3 20 20 H 1.08994 * 110.99300 * 37.80699 * 11 9 7 21 21 H 1.09002 * 111.02291 * 274.00348 * 11 9 7 22 22 H 1.08998 * 110.70777 * 205.96534 * 12 11 9 23 23 H 1.09004 * 110.85772 * 82.79208 * 12 11 9 24 24 H 1.08999 * 109.88869 * 262.87518 * 13 12 11 25 25 H 1.09000 * 109.88774 * 141.68675 * 13 12 11 26 26 H 1.09003 * 112.90536 * 301.83882 * 15 14 13 27 27 H 1.08999 * 113.61359 * 105.46710 * 16 15 14 28 28 H 1.08998 * 113.61587 * 334.57071 * 16 15 14 29 29 H 1.08999 * 113.61287 * 139.98306 * 17 16 15 30 30 H 1.08998 * 113.61441 * 270.79993 * 17 16 15 31 31 H 1.09003 * 113.61637 * 89.15319 * 18 17 16 32 32 H 1.08998 * 113.61538 * 220.05775 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.5876 -2.5561 0.8614 11 6 0.4429 -2.6542 -1.3141 12 6 0.2938 -4.1954 -1.4102 13 6 1.6346 -4.7102 -0.8456 14 7 2.1938 -3.6380 -0.0021 15 6 2.4406 -4.1176 1.3643 16 6 3.2323 -3.1251 2.2320 17 6 3.9886 -4.3406 2.7936 18 6 3.6508 -5.0625 1.4785 19 1 -0.4849 0.8401 0.0004 20 1 1.0004 -2.2621 -2.1646 21 1 -0.5314 -2.1721 -1.2327 22 1 0.1674 -4.5065 -2.4472 23 1 -0.5401 -4.5434 -0.8005 24 1 2.3197 -4.9343 -1.6632 25 1 1.4654 -5.6041 -0.2452 26 1 1.5422 -4.5006 1.8482 27 1 2.6218 -2.6099 2.9736 28 1 3.8619 -2.4471 1.6559 29 1 5.0551 -4.1647 2.9337 30 1 3.5141 -4.7837 3.6692 31 1 4.3950 -4.9152 0.6959 32 1 3.3776 -6.1091 1.6126 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260412081.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:33 Heat of formation + Delta-G solvation = 0.456748 kcal Electronic energy + Delta-G solvation = -12881.731213 eV Core-core repulsion = 10841.713102 eV Total energy + Delta-G solvation = -2040.018111 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.40476 -37.79970 -34.59620 -31.30793 -30.15666 -26.43597 -26.19896 -24.97252 -21.58538 -21.42437 -20.12768 -18.37570 -17.18980 -16.48863 -16.28896 -15.70346 -14.81292 -14.24961 -14.16263 -13.32015 -13.24995 -13.19370 -13.05646 -12.84048 -12.46282 -12.39823 -11.92327 -11.73496 -11.49587 -11.44498 -11.08802 -10.90065 -10.87680 -10.44964 -8.91741 -8.08114 -6.14843 1.42201 1.43894 1.51337 2.44682 3.21225 3.47333 3.79564 3.94182 4.05278 4.12930 4.17162 4.30093 4.47523 4.66995 4.78528 4.89881 4.91607 4.99969 5.05672 5.10707 5.18126 5.23006 5.35108 5.49587 5.55129 5.60983 5.73359 5.80184 6.25351 6.61509 6.69577 6.96569 7.52038 9.00063 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.014455 C = 0.010753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.632556 B = 1936.622626 C = 2603.347056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.496 4.496 8 H 0.053 0.947 9 C 0.214 3.786 10 H -0.028 1.028 11 C -0.103 4.103 12 C -0.140 4.140 13 C 0.046 3.954 14 N -0.528 5.528 15 C 0.045 3.955 16 C -0.123 4.123 17 C -0.127 4.127 18 C -0.112 4.112 19 H 0.259 0.741 20 H 0.041 0.959 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -8.886 1.771 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.107 3.893 10 H -0.010 1.010 11 C -0.142 4.142 12 C -0.178 4.178 13 C -0.082 4.082 14 N -0.253 5.253 15 C -0.064 4.064 16 C -0.161 4.161 17 C -0.165 4.165 18 C -0.150 4.150 19 H 0.068 0.932 20 H 0.060 0.940 21 H 0.063 0.937 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.058 -8.615 1.578 10.114 hybrid contribution -0.889 1.042 0.318 1.406 sum 4.168 -7.573 1.896 8.850 Atomic orbital electron populations 1.70083 1.07159 1.27122 1.52364 1.25706 0.95647 1.02235 0.95457 0.85656 0.78310 0.79164 0.78777 1.19742 1.21167 1.19766 1.21235 0.92927 0.90582 1.48724 0.92870 1.19836 0.88549 0.88971 0.91929 1.01028 1.22439 0.99243 0.93954 0.98570 1.22826 0.97515 0.96013 1.01476 1.22738 0.94556 0.93679 0.97181 1.63797 1.45500 1.06340 1.09634 1.23307 0.96172 0.97490 0.89452 1.22790 0.98761 0.96768 0.97816 1.22732 1.00809 0.95836 0.97117 1.22886 0.96579 0.97750 0.97788 0.93231 0.94028 0.93653 0.89933 0.92496 0.90736 0.92414 0.94106 0.94058 0.91184 0.90090 0.89216 0.89977 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 12.27 21.45 0.26 -54.73 16 2 C 0.01 0.42 5.34 84.65 0.45 0.87 16 3 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.50 -28.03 7.92 25.60 0.20 -27.83 16 8 H 0.05 3.03 7.22 -2.91 -0.02 3.01 16 9 C 0.21 11.17 2.13 44.64 0.09 11.27 16 10 H -0.03 -1.65 7.81 -2.39 -0.02 -1.66 16 11 C -0.10 -5.03 5.86 31.98 0.19 -4.84 16 12 C -0.14 -5.29 6.94 31.78 0.22 -5.07 16 13 C 0.05 1.69 6.66 86.65 0.58 2.26 16 14 N -0.53 -23.04 4.76 -836.54 -3.98 -27.03 16 15 C 0.04 1.71 2.63 45.50 0.12 1.83 16 16 C -0.12 -4.69 6.89 31.12 0.21 -4.48 16 17 C -0.13 -3.51 8.08 31.12 0.25 -3.26 16 18 C -0.11 -3.27 7.58 31.18 0.24 -3.03 16 19 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 20 H 0.04 2.10 8.05 -2.39 -0.02 2.08 16 21 H 0.04 2.40 7.57 -2.39 -0.02 2.38 16 22 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 23 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 24 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.06 1.85 7.55 -2.39 -0.02 1.83 16 26 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 2.98 7.33 -2.39 -0.02 2.96 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -61.71 255.03 1.93 -59.79 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.06 Total: 7.28 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 2.56 Total: -32.28 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.72 Total: -81.75 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.71 1.93 -59.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260412081.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.246 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds